Variant report

Variant	rs112560804
Chromosome Location	chr14:66028148-66028149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66021842..66025531-chr14:66028043..66031703,3	MCF-7	breast:
2	chr14:66025175..66028940-chr14:66031643..66034367,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHURC1-FNTB-4	chr14:66028078-66028156	ucscGeneNc_uc001xiv_2

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv974468	chr14:66027622-66038354	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65995400-66061000	Weak transcription	Gastric	stomach
2	chr14:66003400-66028200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr14:66003800-66041200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:66005400-66028400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr14:66013200-66028200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:66015200-66033600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:66016000-66032800	Weak transcription	Small Intestine	intestine
8	chr14:66016000-66041400	Weak transcription	Ovary	ovary
9	chr14:66016600-66033800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:66018200-66031600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr14:66019400-66028200	Weak transcription	GM12878-XiMat	blood
12	chr14:66021400-66046400	Weak transcription	Thymus	Thymus
13	chr14:66021800-66043000	Weak transcription	Fetal Intestine Small	intestine
14	chr14:66022400-66033400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr14:66022400-66042200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr14:66022400-66047800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr14:66022400-66052400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr14:66022800-66032800	Weak transcription	Adipose Nuclei	Adipose
19	chr14:66022800-66037000	Weak transcription	Stomach Mucosa	stomach
20	chr14:66023200-66028200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr14:66023200-66029400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:66023200-66033000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:66023200-66037400	Weak transcription	Brain Hippocampus Middle	brain
24	chr14:66023200-66040200	Weak transcription	Lung	lung
25	chr14:66023200-66052000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:66023200-66054400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr14:66023400-66028200	Weak transcription	Left Ventricle	heart
28	chr14:66023400-66032800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:66023600-66031200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr14:66023600-66038200	Weak transcription	Brain Substantia Nigra	brain
31	chr14:66023800-66028400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr14:66025400-66040400	Weak transcription	Fetal Lung	lung
33	chr14:66025600-66033000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr14:66026200-66040600	Weak transcription	Brain Angular Gyrus	brain
35	chr14:66026400-66033600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr14:66026400-66036600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr14:66026600-66031400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr14:66026600-66033200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr14:66026800-66031200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr14:66026800-66033800	Weak transcription	Osteobl	bone
41	chr14:66026800-66042200	Weak transcription	Placenta	Placenta
42	chr14:66026800-66048800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr14:66027200-66029600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr14:66027600-66033000	Weak transcription	Colon Smooth Muscle	Colon
45	chr14:66027600-66036600	Weak transcription	Brain Anterior Caudate	brain
46	chr14:66027600-66037200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr14:66027600-66044200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr14:66027800-66028200	Weak transcription	Fetal Stomach	stomach
49	chr14:66027800-66030000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr14:66027800-66030600	Weak transcription	Rectal Mucosa Donor 29	rectum

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