Variant report

Variant	rs1126020
Chromosome Location	chr1:217004945-217004946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10492955	1.00[EUR][1000 genomes]
rs12088511	1.00[EUR][1000 genomes]
rs12095308	1.00[EUR][1000 genomes]
rs12095404	1.00[EUR][1000 genomes]
rs17043992	1.00[EUR][1000 genomes]
rs1865919	1.00[EUR][1000 genomes]
rs2813697	1.00[EUR][1000 genomes]
rs2813698	1.00[EUR][1000 genomes]
rs2818749	1.00[EUR][1000 genomes]
rs2818750	1.00[EUR][1000 genomes]
rs55879758	1.00[EUR][1000 genomes]
rs73093969	1.00[EUR][1000 genomes]
rs74141644	1.00[EUR][1000 genomes]
rs7515296	1.00[EUR][1000 genomes]
rs7529981	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216989000-217005800	Weak transcription	Left Ventricle	heart
2	chr1:217003200-217007200	Enhancers	Fetal Heart	heart
3	chr1:217003600-217005600	Enhancers	Fetal Intestine Large	intestine
4	chr1:217003800-217005600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:217004000-217005600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:217004400-217005600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:217004400-217005600	Weak transcription	Fetal Stomach	stomach
8	chr1:217004400-217005800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:217004400-217006800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr1:217004400-217014600	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:217004600-217005000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:217004800-217005200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr1:217004800-217008400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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