Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:160850691..160852389-chr1:160852476..160855044,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179914	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11265507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265509	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265512	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265515	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11265518	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12058717	1.00[EUR][1000 genomes]
rs12059277	1.00[MEX][hapmap]
rs12059800	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12060340	1.00[JPT][hapmap]
rs12064282	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12065420	1.00[MEX][hapmap]
rs12074019	1.00[MEX][hapmap]
rs12089284	1.00[EUR][1000 genomes]
rs12090411	1.00[MEX][hapmap]
rs12094026	1.00[MEX][hapmap]
rs12095453	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12095682	1.00[MEX][hapmap]
rs13376023	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16832317	1.00[MEX][hapmap]
rs16832484	1.00[MEX][hapmap]
rs16832505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16832515	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2271966	1.00[EUR][1000 genomes]
rs28541440	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28794254	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35918317	1.00[MEX][hapmap]
rs7553511	1.00[EUR][1000 genomes]
rs7553826	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv946457	chr1:160850522-160852172	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160846800-160854200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:160847200-160852400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr1:160847600-160853800	Weak transcription	Spleen	Spleen
4	chr1:160849000-160852200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:160849200-160855400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:160849400-160854200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:160851000-160855400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr1:160851200-160852800	Weak transcription	Rectal Mucosa Donor 29	rectum

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