Variant report

Variant	rs112896020
Chromosome Location	chr3:88049981-88049982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv536635	chr3:88049304-88088520	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88046800-88050000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr3:88046800-88050000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr3:88046800-88050000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:88046800-88050000	Weak transcription	Gastric	stomach
5	chr3:88046800-88050000	Weak transcription	NH-A	brain
6	chr3:88046800-88054400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:88047000-88050000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr3:88047200-88050000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:88047400-88050000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:88047400-88050000	Weak transcription	Liver	Liver
11	chr3:88047400-88050000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:88048400-88050000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:88048600-88050000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr3:88048600-88050000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr3:88048600-88050000	Weak transcription	Right Ventricle	heart
16	chr3:88048600-88050000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr3:88048600-88054200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr3:88049800-88050000	Enhancers	Adipose Nuclei	Adipose
19	chr3:88049800-88050200	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr3:88049800-88050200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:88049800-88050200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:88049800-88050200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:88049800-88050400	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr3:88049800-88050400	Active TSS	Right Atrium	heart
25	chr3:88049800-88050600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:88049800-88050600	Active TSS	Brain Anterior Caudate	brain
27	chr3:88049800-88050600	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr3:88049800-88050600	Active TSS	Brain Substantia Nigra	brain
29	chr3:88049800-88050600	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr3:88049800-88050600	Active TSS	Pancreatic Islets	Pancreatic Islet

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