Variant report

Variant	rs113009024
Chromosome Location	chr5:80751555-80751556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1028498	chr5:80712364-80860430	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2524327	chr5:80750171-80751728	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
4	esv3384481	chr5:80750446-80752444	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
5	esv2125406	chr5:80750963-80751683	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
6	esv3469423	chr5:80751023-80751559	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
7	esv3518882	chr5:80751054-80751579	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
8	esv3518879	chr5:80751060-80751555	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
9	esv4616	chr5:80751092-80751666	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80703200-80779200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:80709200-80755200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:80713600-80769200	Weak transcription	Esophagus	oesophagus
4	chr5:80716200-80767800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:80716800-80768400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:80717200-80769200	Weak transcription	Right Ventricle	heart
7	chr5:80718000-80768800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr5:80718400-80752600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:80718400-80754800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr5:80718400-80755000	Weak transcription	GM12878-XiMat	blood
11	chr5:80719000-80769200	Weak transcription	HSMMtube	muscle
12	chr5:80722000-80754800	Weak transcription	HSMM	muscle
13	chr5:80722400-80754800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr5:80722400-80755200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:80722400-80768800	Weak transcription	Colon Smooth Muscle	Colon
16	chr5:80722400-80768800	Weak transcription	Fetal Brain Female	brain
17	chr5:80722600-80767600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr5:80722600-80768000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr5:80722600-80768200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:80722600-80769000	Weak transcription	Brain Hippocampus Middle	brain
21	chr5:80722600-80769000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr5:80722600-80769000	Weak transcription	Fetal Brain Male	brain
23	chr5:80722600-80769000	Weak transcription	Psoas Muscle	Psoas
24	chr5:80722600-80769200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr5:80722800-80755200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr5:80725400-80755200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:80729600-80769200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr5:80729800-80769200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr5:80730600-80767800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr5:80731400-80768800	Weak transcription	Fetal Kidney	kidney
31	chr5:80731800-80769200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr5:80733600-80756000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr5:80735400-80778600	Weak transcription	Aorta	Aorta
34	chr5:80736000-80771200	Weak transcription	NHDF-Ad	bronchial
35	chr5:80736400-80768800	Weak transcription	Fetal Intestine Large	intestine
36	chr5:80738200-80768400	Weak transcription	Brain Germinal Matrix	brain
37	chr5:80739200-80769000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr5:80739600-80768800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr5:80739800-80758600	Strong transcription	Dnd41	blood
40	chr5:80739800-80773200	Strong transcription	Fetal Thymus	thymus
41	chr5:80740400-80768000	Weak transcription	Left Ventricle	heart
42	chr5:80740400-80769400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr5:80742400-80753400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr5:80743000-80753000	Weak transcription	Brain Substantia Nigra	brain
45	chr5:80744000-80754800	Weak transcription	Brain Anterior Caudate	brain
46	chr5:80745200-80771400	Weak transcription	Gastric	stomach
47	chr5:80746800-80769000	Weak transcription	Pancreas	Pancrea
48	chr5:80747000-80754400	Weak transcription	A549	lung
49	chr5:80747000-80768800	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr5:80747000-80769600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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