Variant report

Variant	rs113039329
Chromosome Location	chr16:47176883-47176884
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CREB1	chr16:47176829-47177782	HepG2	liver:	n/a	n/a
2	CTCF	chr16:47176688-47176985	K562	blood:	n/a	n/a
3	POLR2A	chr16:47176840-47178418	GM18526	blood:	n/a	n/a
4	IKZF1	chr16:47176373-47176912	GM12878	blood:	n/a	n/a
5	CTCF	chr16:47176404-47178979	SK-N-SH	brain:	n/a	chr16:47177448-47177461 chr16:47177445-47177463
6	CTCF	chr16:47176800-47176950	WERI-Rb-1	eye:	n/a	n/a
7	STAT1	chr16:47176783-47177795	GM12878	blood:	n/a	n/a
8	POLR2A	chr16:47176586-47178414	IMR90	lung:	n/a	n/a
9	POLR2A	chr16:47176830-47178351	A549	lung:	n/a	n/a
10	CTCF	chr16:47176740-47176890	HCPEpiC	choroid plexus:	n/a	n/a
11	POLR2A	chr16:47176404-47178706	Hela-S3	cervix:	n/a	n/a
12	CTCF	chr16:47176800-47176950	HepG2	liver:	n/a	n/a
13	PML	chr16:47175458-47176903	GM12878	blood:	n/a	chr16:47175565-47175573
14	CTCF	chr16:47176740-47176890	AG04449	skin:	n/a	n/a
15	YY1	chr16:47176720-47177908	HepG2	liver:	n/a	chr16:47177175-47177189 chr16:47177357-47177371 chr16:47177310-47177324 chr16:47177448-47177462 chr16:47177595-47177604 chr16:47177563-47177574
16	POLR2A	chr16:47176766-47178463	Hela-S3	cervix:	n/a	n/a
17	CTCF	chr16:47176779-47176885	SK-N-SH_RA	brain:	n/a	n/a
18	REST	chr16:47175483-47178634	H1-neurons	neurons:	n/a	chr16:47177413-47177431 chr16:47177457-47177470 chr16:47177335-47177348 chr16:47177460-47177473 chr16:47176824-47176837 chr16:47178145-47178158 chr16:47175934-47175954 chr16:47178154-47178167 chr16:47177184-47177197
19	CTCF	chr16:47176740-47176890	RPTEC	kidney:	n/a	n/a
20	RAD21	chr16:47175572-47176904	IMR90	lung:	n/a	n/a
21	POLR2A	chr16:47176714-47177061	K562	blood:	n/a	n/a
22	CTCF	chr16:47176760-47176910	AG09319	gingival:	n/a	n/a
23	MAZ	chr16:47176544-47178399	Hela-S3	cervix:	n/a	n/a
24	CTCF	chr16:47176794-47176930	GM13976	blood:	n/a	n/a
25	MAX	chr16:47176768-47178679	HepG2	liver:	n/a	n/a
26	MAX	chr16:47176708-47178875	A549	lung:	n/a	n/a
27	CHD1	chr16:47175582-47177806	GM12878	blood:	n/a	n/a
28	CTCF	chr16:47176820-47176970	SK-N-SH_RA	brain:	n/a	n/a
29	HA-E2F1	chr16:47176793-47178498	Hela-S3	cervix:	n/a	chr16:47178006-47178015 chr16:47178099-47178109 chr16:47177858-47177867 chr16:47178129-47178139 chr16:47177429-47177438 chr16:47178100-47178110 chr16:47177006-47177016
30	E2F6	chr16:47176809-47178653	Hela-S3	cervix:	n/a	chr16:47178006-47178015 chr16:47178099-47178109 chr16:47177858-47177867 chr16:47178129-47178139 chr16:47177429-47177438 chr16:47178100-47178110 chr16:47177006-47177016
31	POLR2A	chr16:47175566-47178230	GM12878	blood:	n/a	n/a
32	MAX	chr16:47176847-47178106	K562	blood:	n/a	n/a
33	CTCF	chr16:47176740-47176890	NHEK	skin:	n/a	n/a
34	CTCF	chr16:47176800-47176950	GM12866	blood:	n/a	n/a
35	BHLHE40	chr16:47176815-47178581	GM12878	blood:	n/a	chr16:47178152-47178168 chr16:47176993-47177009 chr16:47176944-47176960 chr16:47177449-47177465 chr16:47178004-47178020 chr16:47178144-47178160
36	CTCF	chr16:47176799-47176936	GM12891	blood:	n/a	n/a
37	POLR2A	chr16:47176763-47178663	GM18505	blood:	n/a	n/a
38	EGR1	chr16:47176737-47177035	K562	blood:	n/a	chr16:47176909-47176923
39	EBF1	chr16:47176383-47177093	GM12878	blood:	n/a	chr16:47176871-47176880 chr16:47176871-47176880
40	POLR2A	chr16:47176627-47178681	H1-neurons	neurons:	n/a	n/a
41	HDAC2	chr16:47176674-47177196	HepG2	liver:	n/a	n/a
42	CTCF	chr16:47176740-47176890	HVMF	connective:	n/a	n/a
43	CTCF	chr16:47176455-47176931	K562	blood:	n/a	n/a
44	HA-E2F1	chr16:47176859-47178761	MCF-7	breast:	n/a	chr16:47178006-47178015 chr16:47178099-47178109 chr16:47177858-47177867 chr16:47178129-47178139 chr16:47177429-47177438 chr16:47178100-47178110 chr16:47177006-47177016
45	RCOR1	chr16:47176554-47177590	Hela-S3	cervix:	n/a	n/a
46	BACH1	chr16:47176731-47177908	H1-hESC	embryonic stem cell:	n/a	n/a
47	ZNF143	chr16:47176414-47178698	GM12878	blood:	n/a	chr16:47177310-47177320 chr16:47178099-47178109 chr16:47177394-47177404 chr16:47177858-47177868 chr16:47178100-47178110 chr16:47178033-47178051 chr16:47177198-47177216
48	ZBTB7A	chr16:47176736-47177070	K562	blood:	n/a	n/a
49	RELA	chr16:47176386-47178414	GM15510	blood:	n/a	n/a
50	TCF3	chr16:47176773-47177116	GM12878	blood:	n/a	chr16:47176951-47176964 chr16:47176954-47176968

No.	Distal block	Cell Line	Cell type
1	chr16:47174790..47177797-chr16:47493413..47496816,5	K562	blood:
2	chr16:47005665..47009288-chr16:47176479..47179650,5	K562	blood:
3	chr16:47175296..47177509-chr16:48190040..48191217,7	MCF-7	breast:
4	chr16:47175994..47177897-chr16:48278487..48280949,2	MCF-7	breast:
5	chr16:47174837..47177337-chr16:47189035..47191316,2	K562	blood:
6	chr16:47175524..47179141-chr16:47493736..47496005,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260281	TF binding region
ENSG00000121270	Chromatin interaction
ENSG00000261173	Chromatin interaction
ENSG00000129636	Chromatin interaction
ENSG00000102893	Chromatin interaction
ENSG00000069345	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059456	chr16:46463770-47307580	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1066115	chr16:46463770-47318415	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	esv1798659	chr16:47083332-47234379	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv1823679	chr16:47089357-47194051	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	esv1803802	chr16:47115776-47367144	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv906660	chr16:47123724-47347780	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv1059763	chr16:47147194-47373834	ZNF genes & repeats Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv528423	chr16:47163874-47347780	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	esv1840592	chr16:47171333-47177650	Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
11	esv1821100	chr16:47171333-47330244	Bivalent/Poised TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
12	esv3394603	chr16:47175976-47179024	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	esv3500922	chr16:47176301-47179099	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	esv3500923	chr16:47176301-47179099	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47174200-47178400	Active TSS	GM12878-XiMat	blood
2	chr16:47174600-47178800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr16:47174600-47178800	Active TSS	Fetal Brain Female	brain
4	chr16:47174800-47178400	Active TSS	Brain Germinal Matrix	brain
5	chr16:47175000-47178200	Active TSS	HMEC	breast
6	chr16:47175000-47178800	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr16:47175200-47178600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:47175400-47177200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr16:47175400-47177200	Active TSS	Fetal Brain Male	brain
10	chr16:47175400-47178400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr16:47175400-47178400	Active TSS	Brain Anterior Caudate	brain
12	chr16:47175400-47178400	Active TSS	NH-A	brain
13	chr16:47175400-47178600	Active TSS	Muscle Satellite Cultured Cells	--
14	chr16:47175400-47178600	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr16:47175400-47179000	Active TSS	A549	lung
16	chr16:47175600-47177200	Active TSS	Colonic Mucosa	Colon
17	chr16:47175600-47177200	Bivalent/Poised TSS	Fetal Lung	lung
18	chr16:47175600-47177800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr16:47175600-47178200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr16:47175600-47178200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr16:47175600-47178200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
22	chr16:47175600-47178400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr16:47175600-47178400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr16:47175600-47178400	Active TSS	Brain Cingulate Gyrus	brain
25	chr16:47175600-47178400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr16:47175600-47178400	Active TSS	Brain Substantia Nigra	brain
27	chr16:47175600-47178400	Active TSS	Ovary	ovary
28	chr16:47175600-47178600	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr16:47175600-47178600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr16:47175600-47178600	Active TSS	NHEK	skin
31	chr16:47175600-47178600	Active TSS	NHLF	lung
32	chr16:47175600-47178600	Active TSS	Osteobl	bone
33	chr16:47175600-47178800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr16:47175600-47178800	Active TSS	Brain Hippocampus Middle	brain
35	chr16:47175600-47179000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr16:47175600-47179000	Active TSS	Brain Angular Gyrus	brain
37	chr16:47175800-47177000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr16:47175800-47177200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
39	chr16:47175800-47177200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
40	chr16:47175800-47177400	Active TSS	Right Ventricle	heart
41	chr16:47175800-47177600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr16:47175800-47177600	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr16:47175800-47177600	Active TSS	Right Atrium	heart
44	chr16:47175800-47177800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr16:47175800-47178400	Active TSS	H9 Cell Line	embryonic stem cell
46	chr16:47175800-47178400	Active TSS	Aorta	Aorta
47	chr16:47175800-47178400	Active TSS	Left Ventricle	heart
48	chr16:47175800-47178400	Active TSS	NHDF-Ad	bronchial
49	chr16:47175800-47178600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr16:47175800-47178600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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