Variant report

Variant	rs113325572
Chromosome Location	chr20:23639367-23639368
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:23638862-23643208	HepG2	liver:	n/a	n/a
2	EP300	chr20:23639221-23640166	HepG2	liver:	n/a	n/a
3	FOXA1	chr20:23639318-23640180	HepG2	liver:	n/a	n/a
4	TEAD4	chr20:23639187-23640320	HepG2	liver:	n/a	n/a
5	MBD4	chr20:23639017-23640378	HepG2	liver:	n/a	n/a
6	POLR2A	chr20:23639032-23642728	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000225056	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3341096	chr20:23638652-23642850	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv174337	chr20:23639367-23639368	Enhancers Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23622800-23640000	Weak transcription	Stomach Mucosa	stomach
2	chr20:23633000-23639400	Enhancers	HepG2	liver
3	chr20:23635600-23641600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr20:23636800-23640600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr20:23636800-23640800	Weak transcription	Aorta	Aorta
6	chr20:23637000-23640600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr20:23637200-23640000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr20:23637200-23640600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr20:23637200-23640800	Weak transcription	Fetal Muscle Leg	muscle
10	chr20:23637200-23641000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr20:23637200-23641600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr20:23637200-23643600	Weak transcription	Right Atrium	heart
13	chr20:23637200-23660000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr20:23637400-23639400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr20:23637400-23640800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr20:23637400-23641000	Weak transcription	Esophagus	oesophagus
17	chr20:23637800-23644200	Enhancers	Fetal Intestine Large	intestine
18	chr20:23638000-23640200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr20:23638200-23640000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr20:23638200-23640600	Weak transcription	Adipose Nuclei	Adipose
21	chr20:23638200-23642200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr20:23638400-23639400	Enhancers	HUVEC	blood vessel
23	chr20:23638400-23644200	Enhancers	Fetal Intestine Small	intestine
24	chr20:23638600-23640200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr20:23638600-23641800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr20:23638600-23642000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr20:23639000-23639400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr20:23639000-23639400	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr20:23639000-23639400	Enhancers	Fetal Lung	lung
30	chr20:23639200-23639400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr20:23639200-23639400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr20:23639200-23639400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr20:23639200-23640000	Enhancers	Psoas Muscle	Psoas
34	chr20:23639200-23640200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr20:23639200-23640800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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