Variant report

Variant	rs1133677
Chromosome Location	chr9:6716612-6716613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr9:6716042-6716710	GM12878	blood:	n/a	chr9:6716419-6716428 chr9:6716413-6716434 chr9:6716417-6716430 chr9:6716418-6716427 chr9:6716419-6716428
2	POLR2A	chr9:6715861-6716871	GM19193	blood:	n/a	n/a
3	MAX	chr9:6715602-6716814	HepG2	liver:	n/a	chr9:6716419-6716428 chr9:6716417-6716430 chr9:6716414-6716433 chr9:6716419-6716428 chr9:6716628-6716637
4	POLR2A	chr9:6715916-6716863	GM18505	blood:	n/a	n/a
5	FOXM1	chr9:6716005-6716701	GM12878	blood:	n/a	n/a
6	GABPA	chr9:6715838-6716634	MCF-7	breast:	n/a	n/a
7	USF1	chr9:6715976-6716859	HCT-116	colon:	n/a	chr9:6716419-6716428 chr9:6716413-6716434 chr9:6716417-6716430 chr9:6716418-6716427 chr9:6716419-6716428
8	SMC3	chr9:6715925-6716827	GM12878	blood:	n/a	n/a
9	POLR2A	chr9:6715969-6717152	GM12892	blood:	n/a	n/a
10	MYBL2	chr9:6715733-6716712	HepG2	liver:	n/a	n/a
11	STAT1	chr9:6716024-6716670	GM12878	blood:	n/a	n/a
12	PML	chr9:6715773-6716691	MCF-7	breast:	n/a	n/a
13	TAF1	chr9:6715761-6716644	MCF-7	breast:	n/a	n/a
14	TAF1	chr9:6715916-6716646	GM12878	blood:	n/a	n/a
15	NFATC1	chr9:6716032-6716927	GM12878	blood:	n/a	n/a
16	NR2F2	chr9:6715731-6716937	MCF-7	breast:	n/a	n/a
17	EBF1	chr9:6716031-6716677	GM12878	blood:	n/a	n/a
18	POLR2A	chr9:6715857-6716858	GM15510	blood:	n/a	n/a
19	POLR2A	chr9:6716018-6716954	GM12891	blood:	n/a	n/a
20	POLR2A	chr9:6715786-6716936	GM12878	blood:	n/a	n/a
21	BCLAF1	chr9:6715879-6716683	GM12878	blood:	n/a	chr9:6716073-6716086 chr9:6716320-6716329 chr9:6716213-6716221
22	CREB1	chr9:6715700-6716756	HepG2	liver:	n/a	chr9:6716128-6716141
23	HA-E2F1	chr9:6715388-6716799	MCF-7	breast:	n/a	chr9:6716131-6716140 chr9:6716129-6716138
24	POLR2A	chr9:6715718-6716871	HepG2	liver:	n/a	n/a
25	TAF1	chr9:6715772-6716662	MCF-7	breast:	n/a	n/a
26	ZEB1	chr9:6715769-6716677	GM12878	blood:	n/a	n/a
27	CEBPB	chr9:6716043-6716801	GM12878	blood:	n/a	n/a
28	WRNIP1	chr9:6715969-6716805	GM12878	blood:	n/a	n/a
29	POLR2A	chr9:6715750-6717127	GM12878	blood:	n/a	n/a
30	CHD2	chr9:6716019-6716635	GM12878	blood:	n/a	chr9:6716397-6716407
31	POU2F2	chr9:6715820-6716982	GM12878	blood:	n/a	n/a
32	ELF1	chr9:6715877-6716803	MCF-7	breast:	n/a	chr9:6716689-6716701
33	POLR2A	chr9:6715858-6716667	GM19099	blood:	n/a	n/a
34	POLR2A	chr9:6715802-6716924	PBDE	blood:	n/a	n/a
35	MAX	chr9:6715636-6716864	HCT-116	colon:	n/a	chr9:6716419-6716428 chr9:6716417-6716430 chr9:6716414-6716433 chr9:6716419-6716428 chr9:6716628-6716637
36	TBL1XR1	chr9:6715877-6716664	GM12878	blood:	n/a	n/a
37	RCOR1	chr9:6715929-6716635	GM12878	blood:	n/a	n/a
38	PML	chr9:6715905-6716753	GM12878	blood:	n/a	n/a
39	POLR2A	chr9:6715622-6716994	HepG2	liver:	n/a	n/a
40	POLR2A	chr9:6715786-6717077	GM12878	blood:	n/a	n/a
41	USF1	chr9:6715778-6716774	HCT-116	colon:	n/a	chr9:6716419-6716428 chr9:6716413-6716434 chr9:6716417-6716430 chr9:6716418-6716427 chr9:6716419-6716428
42	CHD1	chr9:6715863-6716902	GM12878	blood:	n/a	chr9:6716397-6716407
43	CEBPB	chr9:6715701-6716620	MCF-7	breast:	n/a	chr9:6715961-6715972
44	MAX	chr9:6715687-6716748	MCF-7	breast:	n/a	chr9:6716419-6716428 chr9:6716417-6716430 chr9:6716414-6716433 chr9:6716419-6716428 chr9:6716628-6716637
45	STAT5A	chr9:6716057-6716854	GM12878	blood:	n/a	n/a
46	RFX5	chr9:6715867-6716660	GM12878	blood:	n/a	n/a
47	TAF1	chr9:6715976-6716642	GM12892	blood:	n/a	n/a
48	POLR2A	chr9:6715860-6716682	GM18526	blood:	n/a	n/a
49	POLR2A	chr9:6715767-6716685	HepG2	liver:	n/a	n/a
50	POLR2A	chr9:6715922-6717066	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:6715258..6717463-chr9:6718537..6720528,2	MCF-7	breast:
2	chr9:6714844..6717578-chr9:6754943..6759087,4	MCF-7	breast:
3	chr9:6702847..6705575-chr9:6714326..6717882,7	MCF-7	breast:
4	chr9:6711589..6718151-chr9:6755774..6759657,12	MCF-7	breast:
5	chr1:100503108..100504085-chr9:6716038..6716673,2	NB4	blood:
6	chr9:6702551..6705246-chr9:6715022..6717677,6	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KDM4C-1	chr9:6716548-6716616	ENSG00000225489.1
2	lnc-KDM4C-1	chr9:6716503-6716619	NONHSAT130156
3	lnc-KDM4C-1	chr9:6716183-6716616	NONHSAT130157

Variant related genes	Relation type
ENSG00000225489	TF binding region
KDM4C	TF binding region
ENSG00000229611	Chromatin interaction
ENSG00000225489	Chromatin interaction
ENSG00000107077	Chromatin interaction
ENSG00000156875	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1052490	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13285924	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13285962	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13286577	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13289146	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13290262	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13292029	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13292102	0.85[EUR][1000 genomes]
rs13292272	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13292782	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28854009	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3178487	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34089484	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34207404	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34258621	0.86[EUR][1000 genomes]
rs34280544	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34354451	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34409304	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34554855	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34561929	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34693373	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34861187	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34880774	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35258799	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35372022	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35465144	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35541686	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35557105	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35857578	0.85[EUR][1000 genomes]
rs36111586	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36122729	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62566461	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62566462	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62566463	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62566464	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62566465	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62566466	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62566468	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62566469	0.90[EUR][1000 genomes]
rs62566471	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62566475	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62566476	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62566477	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62566478	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62566479	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62566480	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62566528	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62566531	0.86[EUR][1000 genomes]
rs62568233	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62568244	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62568247	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62568250	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62568252	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62569485	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66701058	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66945367	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67185345	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67631496	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs68120465	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs71505826	0.91[EUR][1000 genomes]
rs71505827	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs71505828	0.86[EUR][1000 genomes]
rs72697572	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72697574	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:58 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892162	chr9:6480005-6788085	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv2752308	chr9:6523060-6899149	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
3	esv3324686	chr9:6528411-6728310	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
4	nsv1028402	chr9:6542253-6874231	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
5	nsv1018308	chr9:6544766-6869653	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
6	nsv1015462	chr9:6544766-6874231	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
7	nsv870402	chr9:6565246-7016784	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
8	nsv1033539	chr9:6566610-7022554	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
9	nsv466111	chr9:6567841-7017391	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
10	nsv613208	chr9:6567841-7017391	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
11	nsv1029929	chr9:6573752-6852349	Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
12	nsv539969	chr9:6573752-6852349	Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
13	nsv1024831	chr9:6573752-7018641	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
14	esv2758626	chr9:6576991-6838660	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
15	esv2759661	chr9:6576991-6845561	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
16	nsv1031417	chr9:6584138-6823129	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
17	nsv539970	chr9:6584138-6823129	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
18	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
19	nsv1018415	chr9:6605417-6723788	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
20	nsv1021933	chr9:6605417-6824468	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
21	nsv1018845	chr9:6609578-6829592	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
22	nsv1023706	chr9:6619819-6745551	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
23	nsv519777	chr9:6620059-6750556	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
24	nsv613209	chr9:6620059-6750556	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
25	nsv1021304	chr9:6630626-6767080	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
26	nsv1033323	chr9:6630626-6824468	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
27	nsv613210	chr9:6635045-6750556	Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
28	nsv892170	chr9:6641895-6723861	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
29	nsv1028863	chr9:6656619-6725007	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
30	nsv1034003	chr9:6663786-6745551	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
31	nsv1030278	chr9:6669375-6741529	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
32	nsv892173	chr9:6669474-6760919	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
33	nsv466112	chr9:6669474-6786734	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
34	nsv613212	chr9:6669474-6786734	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
35	esv2752309	chr9:6670448-6908200	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
36	nsv466113	chr9:6672097-6731786	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
37	nsv613213	chr9:6672097-6731786	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
38	nsv892175	chr9:6672097-6750556	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
39	nsv892176	chr9:6672097-6760919	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
40	nsv982630	chr9:6672217-6796787	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
41	nsv471273	chr9:6673465-6739489	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
42	nsv892177	chr9:6673465-6750556	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
43	nsv892178	chr9:6673957-6750556	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
44	nsv892179	chr9:6676953-6733456	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
45	nsv892180	chr9:6680477-6750556	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
46	nsv892181	chr9:6680477-7070962	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
47	nsv6470	chr9:6688118-6717908	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
48	esv32977	chr9:6694812-6743422	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
49	nsv870332	chr9:6694842-6911550	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
50	nsv466114	chr9:6697128-6724015	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6715400-6717200	Active TSS	Pancreas	Pancrea
2	chr9:6715600-6716800	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr9:6715600-6716800	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr9:6715600-6716800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
5	chr9:6715600-6716800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr9:6715600-6717000	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr9:6715600-6717000	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr9:6715600-6717000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:6715600-6717000	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr9:6715600-6717600	Active TSS	Colonic Mucosa	Colon
11	chr9:6715800-6716800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
12	chr9:6715800-6716800	Flanking Active TSS	Primary B cells from peripheral blood	blood
13	chr9:6715800-6716800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr9:6715800-6716800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:6715800-6716800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:6715800-6716800	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr9:6715800-6716800	Active TSS	Brain Substantia Nigra	brain
18	chr9:6715800-6716800	Active TSS	Gastric	stomach
19	chr9:6715800-6716800	Active TSS	Rectal Smooth Muscle	rectum
20	chr9:6715800-6716800	Flanking Active TSS	Thymus	Thymus
21	chr9:6715800-6717000	Active TSS	Primary T cells from cord blood	blood
22	chr9:6715800-6717000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
23	chr9:6715800-6717000	Active TSS	Fetal Intestine Large	intestine
24	chr9:6715800-6717600	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr9:6716000-6716800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
26	chr9:6716000-6716800	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
27	chr9:6716000-6717000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
28	chr9:6716200-6716800	Flanking Active TSS	Primary hematopoietic stem cells	blood
29	chr9:6716200-6716800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:6716200-6716800	Flanking Active TSS	Fetal Thymus	thymus
31	chr9:6716400-6716800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:6716400-6716800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr9:6716400-6716800	Flanking Active TSS	Placenta	Placenta
34	chr9:6716400-6716800	Flanking Active TSS	Spleen	Spleen
35	chr9:6716400-6716800	Flanking Active TSS	NHEK	skin
36	chr9:6716400-6717000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr9:6716400-6717000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr9:6716400-6717000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr9:6716400-6717000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr9:6716400-6717000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
41	chr9:6716400-6717000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr9:6716400-6717000	Flanking Active TSS	Fetal Intestine Small	intestine
43	chr9:6716400-6717000	Flanking Active TSS	Stomach Mucosa	stomach
44	chr9:6716400-6717000	Flanking Active TSS	GM12878-XiMat	blood
45	chr9:6716600-6716800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr9:6716600-6716800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr9:6716600-6716800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
48	chr9:6716600-6716800	Active TSS	Adipose Nuclei	Adipose
49	chr9:6716600-6716800	Enhancers	Esophagus	oesophagus
50	chr9:6716600-6716800	Bivalent/Poised TSS	Fetal Stomach	stomach

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