Variant report
| Variant | rs113738336 |
|---|---|
| Chromosome Location | chr6:102521802-102521803 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:9)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:9 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | BACH1 | chr6:102521688-102521925 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 2 | FOSL2 | chr6:102521670-102522033 | HepG2 | liver: | n/a | chr6:102521846-102521857 |
| 3 | USF1 | chr6:102521775-102522008 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 4 | TCF12 | chr6:102521773-102521918 | GM12878 | blood: | n/a | n/a |
| 5 | USF1 | chr6:102521687-102521956 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 6 | FOSL2 | chr6:102521770-102522018 | HepG2 | liver: | n/a | chr6:102521846-102521857 |
| 7 | JUND | chr6:102521777-102521972 | HepG2 | liver: | n/a | n/a |
| 8 | POLR2A | chr6:102521743-102521909 | MCF-7 | breast: | n/a | n/a |
| 9 | JUND | chr6:102521792-102521917 | HepG2 | liver: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000218536 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032499 | chr6:102069885-102720998 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv470850 | chr6:102343078-102595587 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv830744 | chr6:102369761-102566737 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1022069 | chr6:102470600-102598244 | Weak transcription Enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv529294 | chr6:102474505-103122745 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv604321 | chr6:102518945-102603013 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
