Variant report

Variant	rs1137437
Chromosome Location	chr2:37438993-37438994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:37438989-37439593	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37438602..37441837-chr2:37456700..37460160,3	K562	blood:
2	chr2:37434746..37437619-chr2:37437960..37439750,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C2orf56-1	chr2:37436018-37439820	ENSG00000272054.1

Variant related genes	Relation type
CEBPZ-AS1	TF binding region
ENSG00000003509	Chromatin interaction
ENSG00000272054	Chromatin interaction
ENSG00000115816	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10177176	0.96[CEU][hapmap]
rs10182759	0.82[EUR][1000 genomes]
rs10184179	0.88[CEU][hapmap];0.84[TSI][hapmap]
rs10190959	0.92[CEU][hapmap]
rs10209937	1.00[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs1056021	0.81[GIH][hapmap]
rs10865123	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11124569	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs11124574	0.92[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap]
rs1137453	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1158218	0.92[CEU][hapmap];0.81[GIH][hapmap];0.91[TSI][hapmap]
rs1158219	0.92[CEU][hapmap];0.82[TSI][hapmap]
rs12618410	0.96[CEU][hapmap]
rs12992047	0.89[ASN][1000 genomes]
rs12993090	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2041836	0.92[CEU][hapmap]
rs2268990	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2287093	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2888434	0.96[CEU][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs3213745	0.96[CEU][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs3755195	0.96[CEU][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs3770752	0.88[CEU][hapmap]
rs3770759	0.96[CEU][hapmap]
rs4998429	0.96[CEU][hapmap];0.80[JPT][hapmap];0.82[EUR][1000 genomes]
rs6743782	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs7589296	0.86[EUR][1000 genomes]
rs876462	0.92[CEU][hapmap]
rs9309004	0.92[CEU][hapmap]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs1137437	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL
rs1137437	CEBPZ	cis	Nerve Tibial	GTEx
rs1137437	CEBPZ	cis	lymphoblastoid	seeQTL
rs1137437	CEBPZ	cis	cerebellum	SCAN
rs1137437	RP11-423P10.2	cis	Esophagus Muscularis	GTEx
rs1137437	CEBPZ	cis	Esophagus Muscularis	GTEx
rs1137437	CEBPZ	cis	Esophagus Mucosa	GTEx
rs1137437	PRKD3	cis	lung	GTEx
rs1137437	RP11-423P10.2	cis	Esophagus Mucosa	GTEx
rs1137437	CEBPZ	cis	Adipose Subcutaneous	GTEx
rs1137437	CEBPZ	cis	Thyroid	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37424400-37446400	Weak transcription	Small Intestine	intestine
2	chr2:37425000-37444200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:37426600-37451400	Strong transcription	Fetal Thymus	thymus
4	chr2:37427200-37441200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:37427600-37439600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:37427800-37451400	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr2:37428000-37439600	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr2:37429000-37449200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:37429400-37449000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr2:37429800-37452600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:37431200-37440200	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr2:37431200-37441200	Strong transcription	Adipose Nuclei	Adipose
13	chr2:37431200-37442400	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr2:37431200-37450600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:37431200-37450600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:37431200-37452400	Strong transcription	Dnd41	blood
17	chr2:37431400-37450800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:37432400-37444600	Strong transcription	Placenta Amnion	Placenta Amnion
19	chr2:37432800-37440400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr2:37433000-37439800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr2:37433000-37451600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr2:37433200-37450600	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr2:37433400-37439200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
24	chr2:37433800-37440000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr2:37433800-37440000	Weak transcription	Esophagus	oesophagus
26	chr2:37433800-37440600	Weak transcription	Lung	lung
27	chr2:37433800-37442200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr2:37433800-37444200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr2:37433800-37445800	Strong transcription	Placenta	Placenta
30	chr2:37433800-37447800	Weak transcription	Aorta	Aorta
31	chr2:37433800-37447800	Weak transcription	Gastric	stomach
32	chr2:37433800-37448000	Weak transcription	Pancreas	Pancrea
33	chr2:37433800-37453600	Weak transcription	Spleen	Spleen
34	chr2:37434000-37439200	Weak transcription	NHLF	lung
35	chr2:37434000-37447600	Weak transcription	Right Ventricle	heart
36	chr2:37434200-37452400	Strong transcription	Primary B cells from peripheral blood	blood
37	chr2:37435400-37439400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr2:37435400-37440200	Strong transcription	Colonic Mucosa	Colon
39	chr2:37435400-37442600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr2:37435600-37439000	Strong transcription	A549	lung
41	chr2:37435600-37439400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr2:37435600-37441000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr2:37435600-37442800	Strong transcription	HUVEC	blood vessel
44	chr2:37435600-37444800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
45	chr2:37435600-37444800	Strong transcription	Colon Smooth Muscle	Colon
46	chr2:37435800-37439800	Strong transcription	Brain Substantia Nigra	brain
47	chr2:37435800-37440200	Strong transcription	HSMM	muscle
48	chr2:37436000-37439800	Strong transcription	Fetal Kidney	kidney
49	chr2:37436000-37440800	Strong transcription	Fetal Muscle Trunk	muscle
50	chr2:37436000-37443600	Strong transcription	NHDF-Ad	bronchial

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