Variant report

Variant	rs114209836
Chromosome Location	chr20:25678586-25678587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SREBP1	chr20:25676527-25679236	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:25603699..25606216-chr20:25676779..25679090,3	MCF-7	breast:
2	chr20:25477099..25478848-chr20:25676437..25678716,2	MCF-7	breast:
3	chr20:25604068..25607059-chr20:25675582..25678596,4	MCF-7	breast:
4	chr20:25602422..25607796-chr20:25675112..25679388,9	K562	blood:
5	chr20:25602965..25606226-chr20:25676160..25678613,3	K562	blood:

No data

Variant related genes	Relation type
ZNF337	TF binding region
ENSG00000101004	Chromatin interaction
ENSG00000213742	Chromatin interaction
ENSG00000170191	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1056288	chr20:25662941-25744711	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1057618	chr20:25665455-25744711	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv3486652	chr20:25678552-25682550	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25676000-25678800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr20:25676200-25678600	Active TSS	A549	lung
3	chr20:25676600-25678600	Active TSS	HMEC	breast
4	chr20:25676600-25678800	Active TSS	Brain Germinal Matrix	brain
5	chr20:25676600-25679200	Active TSS	GM12878-XiMat	blood
6	chr20:25677800-25678600	Weak transcription	Spleen	Spleen
7	chr20:25677800-25678800	Active TSS	Fetal Brain Male	brain
8	chr20:25677800-25701000	Weak transcription	Pancreas	Pancrea
9	chr20:25678000-25678600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr20:25678000-25678600	Weak transcription	Brain Substantia Nigra	brain
11	chr20:25678000-25678600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr20:25678000-25678600	Weak transcription	Stomach Mucosa	stomach
13	chr20:25678000-25678800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr20:25678000-25678800	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr20:25678000-25678800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr20:25678000-25678800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr20:25678000-25678800	Enhancers	Brain Angular Gyrus	brain
18	chr20:25678000-25679000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr20:25678000-25679000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr20:25678000-25679000	Flanking Active TSS	Dnd41	blood
21	chr20:25678000-25679600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr20:25678000-25679600	Enhancers	Liver	Liver
23	chr20:25678000-25681600	Weak transcription	Brain Hippocampus Middle	brain
24	chr20:25678000-25687600	Weak transcription	Esophagus	oesophagus
25	chr20:25678200-25678600	Weak transcription	HSMMtube	muscle
26	chr20:25678400-25678600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr20:25678400-25678600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr20:25678400-25678800	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr20:25678400-25678800	Enhancers	Right Atrium	heart
30	chr20:25678400-25678800	Enhancers	NHEK	skin
31	chr20:25678400-25679200	Enhancers	Fetal Brain Female	brain
32	chr20:25678400-25679200	Enhancers	HepG2	liver

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