The 2.0 version of rSNPBase

Variant report

Variant rs1143634
Chromosome Location chr2:113590390-113590391
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:113582400-113592000 Weak transcription NH-A brain
2 chr2:113583000-113592200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr2:113583600-113591200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
4 chr2:113583600-113592000 Weak transcription Osteobl bone
5 chr2:113587200-113590400 Weak transcription Fetal Intestine Small intestine
6 chr2:113587600-113593800 Transcr. at gene 5' and 3' Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr2:113588000-113591200 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr2:113588000-113593600 Transcr. at gene 5' and 3' Primary hematopoietic stem cells G-CSF-mobilized Female --
9 chr2:113588800-113590600 Enhancers Fetal Thymus thymus
10 chr2:113588800-113590600 Enhancers GM12878-XiMat blood
11 chr2:113588800-113591000 Enhancers Lung lung
12 chr2:113588800-113591800 Genic enhancers Primary monocytes fromperipheralblood blood
13 chr2:113589000-113593600 Transcr. at gene 5' and 3' Monocytes-CD14+_RO01746 blood
14 chr2:113589000-113594000 Transcr. at gene 5' and 3' Primary neutrophils fromperipheralblood blood
15 chr2:113589400-113590400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr2:113589400-113590400 Flanking Active TSS Primary hematopoietic stem cells blood
17 chr2:113589400-113590600 Enhancers Primary Natural Killer cells fromperipheralblood blood
18 chr2:113589400-113591000 Weak transcription Breast Myoepithelial Primary Cells Breast
19 chr2:113589400-113591200 Weak transcription Small Intestine intestine
20 chr2:113589400-113591600 Genic enhancers HMEC breast
21 chr2:113589400-113592200 Weak transcription Pancreas Pancrea
22 chr2:113589600-113590400 Enhancers Duodenum Mucosa Duodenum
23 chr2:113589600-113590800 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr2:113589600-113591600 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr2:113589600-113591800 Weak transcription Stomach Mucosa stomach
26 chr2:113589600-113594800 Weak transcription Esophagus oesophagus
27 chr2:113589800-113590400 Genic enhancers Primary hematopoietic stem cells short term culture blood
28 chr2:113589800-113590400 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr2:113589800-113591000 Weak transcription Fetal Muscle Trunk muscle
30 chr2:113589800-113591600 Weak transcription Adipose Nuclei Adipose
31 chr2:113590000-113591000 Strong transcription Spleen Spleen
32 chr2:113590000-113591600 Weak transcription Fetal Adrenal Gland Adrenal Gland
33 chr2:113590000-113591600 Weak transcription HUVEC blood vessel
34 chr2:113590000-113593400 Weak transcription Fetal Muscle Leg muscle
35 chr2:113590000-113594000 Transcr. at gene 5' and 3' NHEK skin
36 chr2:113590200-113590400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
37 chr2:113590200-113591600 Enhancers Primary B cells from cord blood blood
38 chr2:113590200-113591800 Enhancers HepG2 liver
39 chr2:113590200-113593400 Weak transcription Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015