Variant report

Variant	rs1143643
Chromosome Location	chr2:113588302-113588303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113586763..113589064-chr2:113590653..113592302,3	K562	blood:
2	chr2:113583953..113585780-chr2:113586794..113589509,2	K562	blood:
3	chr2:113582868..113585453-chr2:113586794..113589453,2	K562	blood:

Variant related genes	Relation type
ENSG00000125538	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1143633	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3181067	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917368	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1143643	IL1B	cis	multi-tissue	Pritchard

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113582200-113588800	Weak transcription	Lung	lung
2	chr2:113582400-113592000	Weak transcription	NH-A	brain
3	chr2:113582800-113589400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:113583000-113592200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:113583600-113591200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:113583600-113592000	Weak transcription	Osteobl	bone
7	chr2:113586400-113588800	Genic enhancers	Primary hematopoietic stem cells	blood
8	chr2:113586800-113588800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr2:113586800-113589000	Weak transcription	Pancreas	Pancrea
10	chr2:113587000-113589000	Weak transcription	Primary B cells from cord blood	blood
11	chr2:113587000-113589000	Strong transcription	NHEK	skin
12	chr2:113587000-113589600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:113587200-113588800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr2:113587200-113588800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:113587200-113589400	Strong transcription	HMEC	breast
16	chr2:113587200-113590400	Weak transcription	Fetal Intestine Small	intestine
17	chr2:113587400-113589000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr2:113587400-113590200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr2:113587600-113593800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr2:113588000-113591200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr2:113588000-113593600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr2:113588200-113589000	Genic enhancers	Primary neutrophils fromperipheralblood	blood

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