Variant report

Variant	rs1148155
Chromosome Location	chr10:25655610-25655611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10828774	0.88[CEU][hapmap]
rs11014510	0.82[ASN][1000 genomes]
rs1122775	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1122776	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1148154	0.89[CEU][hapmap]
rs12219956	0.82[ASN][1000 genomes]
rs1329264	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1329265	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1341961	0.83[CEU][hapmap]
rs1341963	0.92[ASN][1000 genomes]
rs1341964	0.82[ASN][1000 genomes]
rs1341966	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1413397	0.85[ASN][1000 genomes]
rs1576317	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1576318	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1576320	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1576321	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1590836	0.82[ASN][1000 genomes]
rs1591249	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1591250	0.82[ASN][1000 genomes]
rs1612200	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1626372	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1628986	0.89[CEU][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1630323	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1632593	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754251	0.89[CEU][hapmap]
rs1754253	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754254	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754255	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754256	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754257	0.82[ASN][1000 genomes]
rs1754258	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754260	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754264	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754265	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754268	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754269	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754270	0.80[AMR][1000 genomes]
rs1754271	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1760716	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1760718	0.85[ASN][1000 genomes]
rs1760726	0.82[ASN][1000 genomes]
rs1760727	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760728	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760729	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760730	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760733	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760734	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760735	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760755	0.90[ASN][1000 genomes]
rs1760758	0.95[ASN][1000 genomes]
rs1760759	0.95[ASN][1000 genomes]
rs1760762	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1760763	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760764	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760765	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760766	0.90[CEU][hapmap]
rs1760767	0.89[CEU][hapmap]
rs1773607	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773608	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773609	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773612	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1773614	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773616	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773618	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773622	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773623	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773625	0.89[CEU][hapmap]
rs1773648	0.90[ASN][1000 genomes]
rs1773649	0.91[ASN][1000 genomes]
rs1773650	0.91[ASN][1000 genomes]
rs1773651	0.90[ASN][1000 genomes]
rs1773689	0.92[ASN][1000 genomes]
rs1773690	0.92[ASN][1000 genomes]
rs2262989	0.90[ASN][1000 genomes]
rs2795044	0.85[ASN][1000 genomes]
rs2807245	0.91[ASN][1000 genomes]
rs2807247	0.87[ASN][1000 genomes]
rs2807248	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2807255	0.85[ASN][1000 genomes]
rs4351726	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs476972	0.90[ASN][1000 genomes]
rs489052	0.91[ASN][1000 genomes]
rs489186	0.91[ASN][1000 genomes]
rs495338	0.91[ASN][1000 genomes]
rs495456	0.85[CEU][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs509285	0.84[CEU][hapmap]
rs516071	0.84[CEU][hapmap];0.91[ASN][1000 genomes]
rs518751	0.88[ASN][1000 genomes]
rs541206	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs573812	0.91[ASN][1000 genomes]
rs7079892	0.90[CEU][hapmap]
rs7091686	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs824590	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs824592	0.82[ASN][1000 genomes]
rs824593	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs824597	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs824598	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs824599	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3342880	chr10:25644995-25682820	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv550225	chr10:25653017-25671382	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv550226	chr10:25653017-25693426	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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