Variant report

Variant	rs11487469
Chromosome Location	chr1:225403701-225403702
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1067206	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1067207	0.83[AMR][1000 genomes]
rs10799296	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10915791	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10915797	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10915798	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10915802	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10915803	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10915806	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11577306	0.83[AMR][1000 genomes]
rs11586783	0.83[AMR][1000 genomes]
rs12064555	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12068189	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12068193	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12073257	0.83[ASN][1000 genomes]
rs12077485	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12077966	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12088056	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12090119	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12097990	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12728007	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12733373	0.82[AMR][1000 genomes]
rs12733733	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12754230	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1480101	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1480107	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2035302	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34115920	0.83[AMR][1000 genomes]
rs34248528	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34524645	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34737903	0.83[AMR][1000 genomes]
rs34937935	0.83[AMR][1000 genomes]
rs35150136	0.81[AMR][1000 genomes]
rs35352581	0.83[AMR][1000 genomes]
rs35852721	0.84[AMR][1000 genomes]
rs4653608	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4653610	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4653614	0.88[EUR][1000 genomes]
rs56332582	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59493468	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61851476	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61851487	0.80[AMR][1000 genomes]
rs61851519	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs621210	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs633544	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs634342	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs634895	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6666735	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs669326	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6693785	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs674025	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs675571	0.83[AMR][1000 genomes]
rs71646708	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7536245	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7541259	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7555756	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9887766	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9887975	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv468205	chr1:225304971-225476025	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv549264	chr1:225304971-225476025	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv945672	chr1:225339532-225561349	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv873226	chr1:225347689-225555602	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv832703	chr1:225375953-225520216	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1014968	chr1:225389490-225459008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
8	nsv1005481	chr1:225389490-225462887	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
9	nsv997904	chr1:225389490-225466637	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1002430	chr1:225389490-225471683	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv2762171	chr1:225390933-225463772	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
12	nsv549265	chr1:225395959-225462346	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225398000-225404800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:225398000-225417800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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