Variant report

Variant	rs11489480
Chromosome Location	chr7:145566180-145566181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:145563311..145566227-chr7:145589236..145592014,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs12111803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12112908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56926166	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57727563	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58978891	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60764366	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61016174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6951352	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6951353	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6954391	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6954396	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6954685	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6954857	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6958710	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6959043	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6960168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6960960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6962759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6971359	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6973173	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6977634	0.85[AFR][1000 genomes]
rs73451004	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451006	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451009	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451019	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451020	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451022	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451026	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451034	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451035	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451038	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451040	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451041	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451043	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451047	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451048	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451056	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451059	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451061	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451063	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451067	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451073	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451076	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73453052	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73453053	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73453057	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73453075	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73453076	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456911	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456916	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456929	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456936	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465701	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467313	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467316	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467317	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467318	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467322	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467324	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467325	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467326	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467331	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467335	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467337	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467361	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467362	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467365	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467367	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467370	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467373	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7778402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754040	chr7:145303352-145698352	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2755386	chr7:145303352-145698352	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1019118	chr7:145483353-145639795	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145565800-145566200	ZNF genes & repeats	Colonic Mucosa	Colon
2	chr7:145566000-145566400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:145566000-145583800	Weak transcription	K562	blood

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