Variant report

Variant	rs1149854
Chromosome Location	chr13:50914355-50914356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50910484..50912390-chr13:50913694..50915729,2	MCF-7	breast:
2	chr13:50902731..50904245-chr13:50913410..50915488,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176124	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1086510	1.00[EUR][1000 genomes]
rs1149855	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1149856	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1149861	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1149867	0.81[YRI][hapmap];0.85[AFR][1000 genomes]
rs1149868	0.81[YRI][hapmap];0.89[AFR][1000 genomes]
rs1149871	0.89[AMR][1000 genomes]
rs1262860	0.89[AFR][1000 genomes]
rs1623198	0.84[AFR][1000 genomes]
rs1659606	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs200227	0.89[AMR][1000 genomes]
rs2580177	0.89[AFR][1000 genomes]
rs2740532	0.82[YRI][hapmap];0.89[AFR][1000 genomes]
rs2762044	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2762062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2812220	0.89[AMR][1000 genomes]
rs55929963	1.00[EUR][1000 genomes]
rs55987657	1.00[EUR][1000 genomes]
rs56222340	1.00[EUR][1000 genomes]
rs56277884	1.00[EUR][1000 genomes]
rs56285935	1.00[EUR][1000 genomes]
rs57723811	1.00[EUR][1000 genomes]
rs57938299	1.00[EUR][1000 genomes]
rs58214088	1.00[EUR][1000 genomes]
rs58521176	1.00[EUR][1000 genomes]
rs58911842	1.00[EUR][1000 genomes]
rs59137919	1.00[EUR][1000 genomes]
rs59563441	1.00[EUR][1000 genomes]
rs59729773	1.00[EUR][1000 genomes]
rs59951137	1.00[EUR][1000 genomes]
rs60147627	1.00[EUR][1000 genomes]
rs60154020	1.00[EUR][1000 genomes]
rs61382687	1.00[EUR][1000 genomes]
rs61495306	1.00[EUR][1000 genomes]
rs706607	1.00[EUR][1000 genomes]
rs706612	1.00[EUR][1000 genomes]
rs7324132	1.00[EUR][1000 genomes]
rs7337343	1.00[EUR][1000 genomes]
rs73483957	1.00[EUR][1000 genomes]
rs73483973	1.00[EUR][1000 genomes]
rs73494087	1.00[EUR][1000 genomes]
rs73495815	1.00[EUR][1000 genomes]
rs73495825	1.00[EUR][1000 genomes]
rs73495852	1.00[EUR][1000 genomes]
rs73495865	1.00[EUR][1000 genomes]
rs73495869	1.00[EUR][1000 genomes]
rs73495873	1.00[EUR][1000 genomes]
rs73495880	1.00[EUR][1000 genomes]
rs73495885	1.00[EUR][1000 genomes]
rs73495888	1.00[EUR][1000 genomes]
rs73495900	1.00[EUR][1000 genomes]
rs73498015	1.00[EUR][1000 genomes]
rs73498022	1.00[EUR][1000 genomes]
rs73498030	1.00[EUR][1000 genomes]
rs73498061	1.00[EUR][1000 genomes]
rs73498091	1.00[EUR][1000 genomes]
rs73498093	1.00[EUR][1000 genomes]
rs73498096	1.00[EUR][1000 genomes]
rs73500213	1.00[EUR][1000 genomes]
rs73500225	1.00[EUR][1000 genomes]
rs73500236	1.00[EUR][1000 genomes]
rs73500241	1.00[EUR][1000 genomes]
rs73500242	1.00[EUR][1000 genomes]
rs73500246	1.00[EUR][1000 genomes]
rs73500250	1.00[EUR][1000 genomes]
rs73500259	1.00[EUR][1000 genomes]
rs73500262	1.00[EUR][1000 genomes]
rs73500270	1.00[EUR][1000 genomes]
rs73500278	1.00[EUR][1000 genomes]
rs73500279	1.00[EUR][1000 genomes]
rs73500287	1.00[EUR][1000 genomes]
rs73500290	1.00[EUR][1000 genomes]
rs73500300	1.00[EUR][1000 genomes]
rs73500302	1.00[EUR][1000 genomes]
rs73502108	1.00[EUR][1000 genomes]
rs73502118	1.00[EUR][1000 genomes]
rs73502137	1.00[EUR][1000 genomes]
rs74079205	1.00[EUR][1000 genomes]
rs74079217	1.00[EUR][1000 genomes]
rs74079242	1.00[EUR][1000 genomes]
rs790938	1.00[EUR][1000 genomes]
rs7981983	1.00[EUR][1000 genomes]
rs7990648	1.00[EUR][1000 genomes]
rs7996036	1.00[EUR][1000 genomes]
rs806302	0.89[AMR][1000 genomes]
rs9591331	1.00[EUR][1000 genomes]
rs973627	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50909200-50918600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr13:50909400-50915200	Weak transcription	Fetal Kidney	kidney
3	chr13:50909800-50914400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr13:50909800-50915200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:50911400-50915400	Weak transcription	Aorta	Aorta
6	chr13:50912600-50916000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr13:50912800-50914600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:50912800-50915000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr13:50912800-50915000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:50913000-50914800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr13:50913000-50916400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr13:50913000-50921000	Weak transcription	HepG2	liver
13	chr13:50913200-50914400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr13:50913400-50915000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr13:50913600-50914600	Enhancers	Fetal Thymus	thymus
16	chr13:50913600-50914800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr13:50913600-50915800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr13:50913800-50914400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:50913800-50914400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr13:50913800-50916000	Enhancers	Fetal Muscle Leg	muscle
21	chr13:50914000-50914600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr13:50914000-50914800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr13:50914000-50914800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr13:50914000-50914800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr13:50914000-50915200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr13:50914000-50915200	Enhancers	Fetal Muscle Trunk	muscle
27	chr13:50914000-50915600	Enhancers	Adipose Nuclei	Adipose
28	chr13:50914200-50915000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr13:50914200-50915200	Enhancers	Fetal Heart	heart

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