Variant report

Variant	rs115028822
Chromosome Location	chr6:158563024-158563025
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:158561518..158564116-chr6:158564191..158567939,4	K562	blood:
2	chr6:158563024..158565422-chr6:158579538..158582441,2	K562	blood:
3	chr6:158560386..158563093-chr6:158564191..158567939,4	K562	blood:

Variant related genes	Relation type
ENSG00000122335	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886797	chr6:158523142-158764191	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv830849	chr6:158539223-158700882	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1025025	chr6:158542594-158743888	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:158517600-158587800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:158518200-158570600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:158518400-158588200	Weak transcription	Colonic Mucosa	Colon
4	chr6:158518800-158572600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:158518800-158587800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:158519000-158574400	Weak transcription	Primary B cells from cord blood	blood
7	chr6:158519000-158587800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:158519000-158588000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:158519800-158588200	Weak transcription	Right Ventricle	heart
10	chr6:158520000-158588200	Weak transcription	HUVEC	blood vessel
11	chr6:158528600-158584400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:158531000-158564200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:158531400-158587800	Weak transcription	Fetal Heart	heart
14	chr6:158532600-158564000	Weak transcription	NH-A	brain
15	chr6:158533800-158567400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:158534000-158587800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:158535200-158588400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:158536800-158567600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:158536800-158567600	Weak transcription	Gastric	stomach
20	chr6:158537000-158564000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:158537000-158575800	Weak transcription	Lung	lung
22	chr6:158537000-158575800	Weak transcription	Thymus	Thymus
23	chr6:158537000-158576000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:158537000-158587800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:158537400-158563800	Weak transcription	NHEK	skin
26	chr6:158537400-158567600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:158537400-158588200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:158538000-158582800	Weak transcription	Small Intestine	intestine
29	chr6:158538600-158588200	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr6:158539400-158570800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:158540000-158588200	Weak transcription	Placenta	Placenta
32	chr6:158541800-158563200	Weak transcription	Brain Angular Gyrus	brain
33	chr6:158543400-158570800	Weak transcription	A549	lung
34	chr6:158543600-158573200	Weak transcription	HepG2	liver
35	chr6:158544400-158570400	Weak transcription	HMEC	breast
36	chr6:158545000-158571600	Weak transcription	HSMM	muscle
37	chr6:158547200-158588000	Weak transcription	Fetal Kidney	kidney
38	chr6:158547600-158582800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:158549800-158570400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:158550600-158564200	Weak transcription	NHDF-Ad	bronchial
41	chr6:158550600-158570400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:158554800-158574800	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:158555400-158588400	Weak transcription	Stomach Mucosa	stomach
44	chr6:158555800-158571200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr6:158557400-158568400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr6:158558000-158588200	Weak transcription	Esophagus	oesophagus
47	chr6:158559000-158564200	Strong transcription	Fetal Brain Female	brain
48	chr6:158559400-158564200	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr6:158559400-158566200	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr6:158559600-158563800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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