Variant report

Variant	rs115107637
Chromosome Location	chr15:76134444-76134445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:76132928-76136942	MCF10A-Er-Src	breast:	n/a	n/a
2	MAX	chr15:76134414-76137112	A549	lung:	n/a	n/a
3	JUN	chr15:76134249-76137370	K562	blood:	n/a	chr15:76137191-76137203 chr15:76137010-76137019
4	YY1	chr15:76134340-76134622	K562	blood:	n/a	n/a
5	RCOR1	chr15:76134396-76134572	K562	blood:	n/a	n/a
6	CEBPB	chr15:76134391-76134654	K562	blood:	n/a	n/a
7	POLR2A	chr15:76134312-76137135	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAFF	chr15:76134405-76134782	K562	blood:	n/a	n/a
9	POLR2A	chr15:76132857-76137099	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76133681..76139746-chr15:76193985..76199740,23	MCF-7	breast:
2	chr15:76133451..76137775-chr15:76156108..76161375,6	MCF-7	breast:
3	chr15:76134186..76138083-chr15:76192925..76200499,13	K562	blood:
4	chr15:75659414..75661741-chr15:76133150..76135870,3	K562	blood:
5	chr15:76133453..76135446-chr15:76194231..76197164,2	MCF-7	breast:
6	chr15:76133553..76135071-chr15:76150512..76152325,2	MCF-7	breast:
7	chr15:76120011..76122209-chr15:76134014..76135562,2	MCF-7	breast:
8	chr15:75660482..75662699-chr15:76134018..76135657,2	MCF-7	breast:

No data

Variant related genes	Relation type
UBE2Q2	TF binding region
ENSG00000167196	Chromatin interaction
ENSG00000140367	Chromatin interaction
ENSG00000140400	Chromatin interaction
ENSG00000260274	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3438606	chr15:76134422-76137270	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76125200-76134800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:76126200-76135000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:76129400-76135000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr15:76129600-76134800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr15:76129600-76135000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr15:76129600-76135000	Weak transcription	Fetal Heart	heart
7	chr15:76129600-76135200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:76129800-76134800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:76129800-76134800	Weak transcription	Osteobl	bone
10	chr15:76129800-76135000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:76129800-76135000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:76129800-76135000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:76129800-76135000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr15:76130000-76134800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:76130000-76134800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:76130000-76134800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:76130000-76134800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr15:76130000-76135000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr15:76130000-76135000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr15:76130000-76135000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr15:76130000-76135000	Weak transcription	NHLF	lung
22	chr15:76130400-76135000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr15:76130600-76134800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:76130600-76135000	Weak transcription	HSMM	muscle
25	chr15:76131600-76134800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:76131600-76134800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:76131800-76134600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:76131800-76135000	Weak transcription	NHEK	skin
29	chr15:76132000-76135000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:76132000-76135000	Weak transcription	HMEC	breast
31	chr15:76132800-76135000	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr15:76133000-76134600	Enhancers	K562	blood
33	chr15:76133000-76135000	Enhancers	Fetal Stomach	stomach
34	chr15:76133200-76135000	Weak transcription	Left Ventricle	heart
35	chr15:76133400-76134600	Weak transcription	Fetal Lung	lung
36	chr15:76133400-76134600	Weak transcription	A549	lung
37	chr15:76133400-76134800	Weak transcription	Colon Smooth Muscle	Colon
38	chr15:76133400-76134800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr15:76133400-76135000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:76133400-76135000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:76133400-76135000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:76133400-76135000	Weak transcription	Brain Germinal Matrix	brain
43	chr15:76133400-76135000	Weak transcription	Ovary	ovary
44	chr15:76133400-76135000	Weak transcription	Small Intestine	intestine
45	chr15:76133400-76135000	Weak transcription	Hela-S3	cervix
46	chr15:76133400-76135000	Weak transcription	NH-A	brain
47	chr15:76133400-76135000	Weak transcription	NHDF-Ad	bronchial
48	chr15:76133600-76134800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:76133600-76135000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr15:76133600-76135000	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links