Variant report

Variant	rs11527805
Chromosome Location	chr10:50755791-50755792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50745672..50748723-chr10:50753394..50755997,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258838	Chromatin interaction
ENSG00000225830	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1012553	0.80[CHB][hapmap]
rs10857494	0.81[ASN][1000 genomes]
rs10857495	0.81[ASN][1000 genomes]
rs10857496	0.82[ASN][1000 genomes]
rs10857498	0.87[ASN][1000 genomes]
rs10857500	0.87[ASN][1000 genomes]
rs10857512	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10857513	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10857514	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10857515	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10857516	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11101133	0.80[ASN][1000 genomes]
rs11101137	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs11101152	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101167	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11101168	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11101170	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11101171	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11101172	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11101174	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11594945	0.85[CHB][hapmap]
rs12218602	0.81[CHB][hapmap]
rs12219170	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12219670	0.81[ASN][1000 genomes]
rs12220085	1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs12221460	0.82[ASN][1000 genomes]
rs12244804	0.81[ASN][1000 genomes]
rs12248521	1.00[YRI][hapmap]
rs12251713	1.00[YRI][hapmap]
rs12259435	0.87[ASN][1000 genomes]
rs12261840	1.00[YRI][hapmap]
rs12411620	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12413113	0.81[CHB][hapmap]
rs12415597	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17010145	1.00[YRI][hapmap]
rs17177717	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1917799	0.85[CHB][hapmap]
rs2222638	0.81[CHB][hapmap]
rs2228528	0.85[CHB][hapmap]
rs2281794	1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs28454254	0.82[ASN][1000 genomes]
rs3750748	1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs3750749	0.85[ASN][1000 genomes]
rs3793786	0.80[CHB][hapmap]
rs3793788	0.81[CHB][hapmap]
rs3810945	0.82[ASN][1000 genomes]
rs4253004	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4253013	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs4253040	0.89[ASN][1000 genomes]
rs4253043	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs4253060	1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs4253082	0.84[CHB][hapmap]
rs4253095	1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs4253138	0.87[ASN][1000 genomes]
rs4253145	0.87[ASN][1000 genomes]
rs4253215	0.82[ASN][1000 genomes]
rs60981594	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61143747	0.80[ASN][1000 genomes]
rs73297748	0.82[ASN][1000 genomes]
rs73305562	0.82[ASN][1000 genomes]
rs7909342	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50750200-50757200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:50755200-50757400	Weak transcription	Hela-S3	cervix
3	chr10:50755400-50760000	Weak transcription	HSMMtube	muscle
4	chr10:50755600-50757800	Weak transcription	Osteobl	bone
5	chr10:50755600-50758000	Weak transcription	HUVEC	blood vessel

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