Variant report

Variant	rs11530167
Chromosome Location	chr11:47322728-47322729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47322137..47324018-chr11:47326754..47328942,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1050244	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10838677	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11039143	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11039145	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11039146	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11039160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11039179	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11039185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2697919	0.83[EUR][1000 genomes]
rs3729936	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3729948	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3729953	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3729991	1.00[AMR][1000 genomes]
rs45603841	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4640	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4647718	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4647730	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4647731	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4647738	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4647752	1.00[AMR][1000 genomes]
rs56023479	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57741802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57852039	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58528246	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58912703	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61124822	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7110333	1.00[AMR][1000 genomes]
rs7943429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv917316	chr11:47232210-47448882	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	esv3330173	chr11:47289256-47450681	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	esv3416377	chr11:47289276-47450651	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47294600-47355200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr11:47295000-47323600	Strong transcription	Dnd41	blood
3	chr11:47295200-47323800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr11:47295200-47326800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:47295400-47323800	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr11:47295400-47324800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:47295400-47324800	Strong transcription	Fetal Thymus	thymus
8	chr11:47295400-47340200	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr11:47295400-47341000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:47295400-47352600	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr11:47295600-47323800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr11:47295600-47323800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr11:47295600-47324000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:47295600-47324200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:47295600-47324200	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr11:47295600-47338800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:47295800-47340600	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:47295800-47352800	Strong transcription	Duodenum Mucosa	Duodenum
19	chr11:47296000-47323000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:47296000-47324000	Strong transcription	Primary T cells from cord blood	blood
21	chr11:47296000-47353600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:47296200-47327000	Strong transcription	Adipose Nuclei	Adipose
23	chr11:47296200-47340400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:47296600-47323800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:47298800-47324200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr11:47299400-47324000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:47300000-47341200	Strong transcription	Placenta	Placenta
28	chr11:47303200-47340600	Strong transcription	Hela-S3	cervix
29	chr11:47311200-47326400	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:47311800-47348800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:47316200-47328200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr11:47316800-47324800	Strong transcription	HSMM	muscle
33	chr11:47317200-47325800	Weak transcription	Pancreas	Pancrea
34	chr11:47317600-47324200	Weak transcription	HSMMtube	muscle
35	chr11:47317600-47325800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr11:47317600-47326400	Weak transcription	Gastric	stomach
37	chr11:47317600-47326600	Weak transcription	Esophagus	oesophagus
38	chr11:47317800-47323800	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:47317800-47327000	Weak transcription	HMEC	breast
40	chr11:47318000-47329800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr11:47318200-47324400	Weak transcription	NHDF-Ad	bronchial
42	chr11:47318400-47324200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr11:47318600-47326400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr11:47318600-47326400	Weak transcription	NHLF	lung
45	chr11:47319000-47324400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr11:47319600-47325400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:47319800-47324800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:47320000-47322800	Strong transcription	Primary hematopoietic stem cells	blood
49	chr11:47320000-47328000	Weak transcription	Small Intestine	intestine
50	chr11:47320200-47324400	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links