Variant report

Variant	rs11540899
Chromosome Location	chr7:101837149-101837150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101829455..101831382-chr7:101834680..101837226,2	K562	blood:

Variant related genes	Relation type
ENSG00000256295	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10270614	0.91[ASN][1000 genomes]
rs10808119	0.91[ASN][1000 genomes]
rs1108056	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1124297	0.89[ASN][1000 genomes]
rs12537077	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28485359	0.91[ASN][1000 genomes]
rs372968	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs375233	0.89[ASN][1000 genomes]
rs375445	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs376244	0.91[ASN][1000 genomes]
rs382947	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs385417	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs408425	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs409224	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs410697	0.80[EUR][1000 genomes]
rs41275218	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs420920	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs424549	0.89[ASN][1000 genomes]
rs434624	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs437060	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs439268	0.84[ASN][1000 genomes]
rs448775	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs451352	0.89[ASN][1000 genomes]
rs56077916	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56235745	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60987662	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67531258	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970036	0.86[ASN][1000 genomes]
rs6976947	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101797800-101852200	Weak transcription	NHEK	skin
2	chr7:101800400-101850000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:101800600-101851800	Strong transcription	Fetal Intestine Small	intestine
4	chr7:101801200-101864000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:101805400-101862200	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:101808200-101840200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:101808400-101868400	Strong transcription	Thymus	Thymus
8	chr7:101812400-101860800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:101812600-101863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:101812600-101867000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr7:101812600-101867000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr7:101813200-101852000	Weak transcription	NHDF-Ad	bronchial
13	chr7:101813800-101860800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:101814000-101863600	Weak transcription	HUVEC	blood vessel
15	chr7:101814200-101858600	Weak transcription	Right Atrium	heart
16	chr7:101814400-101840200	Weak transcription	NH-A	brain
17	chr7:101814600-101837200	Weak transcription	HSMM	muscle
18	chr7:101814600-101840200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr7:101816000-101859800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr7:101817200-101851200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr7:101819600-101837400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:101820600-101838600	Strong transcription	Fetal Intestine Large	intestine
23	chr7:101820600-101860200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr7:101821200-101857200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr7:101823400-101853800	Weak transcription	Fetal Kidney	kidney
26	chr7:101824400-101851200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr7:101824400-101863400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:101827600-101845400	Weak transcription	Stomach Mucosa	stomach
29	chr7:101829400-101870800	Weak transcription	Small Intestine	intestine
30	chr7:101829600-101838800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:101829600-101839000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr7:101829600-101848800	Weak transcription	Brain Angular Gyrus	brain
33	chr7:101830400-101837600	Strong transcription	A549	lung
34	chr7:101831000-101837800	Strong transcription	HepG2	liver
35	chr7:101831400-101845400	Strong transcription	Liver	Liver
36	chr7:101831600-101850200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr7:101831600-101851000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr7:101831600-101855800	Strong transcription	Left Ventricle	heart
39	chr7:101831800-101842600	Strong transcription	Gastric	stomach
40	chr7:101831800-101852200	Strong transcription	Lung	lung
41	chr7:101832000-101843600	Weak transcription	HMEC	breast
42	chr7:101832200-101846000	Strong transcription	Adipose Nuclei	Adipose
43	chr7:101832200-101850400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr7:101832200-101858200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr7:101832200-101859200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr7:101832200-101859400	Strong transcription	Fetal Thymus	thymus
47	chr7:101832200-101863200	Strong transcription	Dnd41	blood
48	chr7:101832400-101853800	Strong transcription	Fetal Muscle Leg	muscle
49	chr7:101832400-101856600	Strong transcription	Stomach Smooth Muscle	stomach
50	chr7:101832400-101864000	Strong transcription	Fetal Stomach	stomach

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