Variant report

Variant	rs1154326
Chromosome Location	chr7:126618457-126618458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr7:126618402-126618479	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126612202..126614471-chr7:126617154..126618998,2	K562	blood:

Variant related genes	Relation type
ENSG00000230820	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1003037	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1003038	1.00[CEU][hapmap]
rs1154333	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1155655	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1155657	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1204553	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1204554	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1204555	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1204556	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1204557	1.00[CEU][hapmap]
rs1204558	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1204559	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1204560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1204561	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1204562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1204565	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1204566	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1204568	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1204570	1.00[JPT][hapmap]
rs1204572	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1204573	1.00[CEU][hapmap]
rs1204574	0.95[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1204582	1.00[JPT][hapmap]
rs1204585	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1204589	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1204590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs1204595	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1361970	0.88[EUR][1000 genomes]
rs1419455	0.86[EUR][1000 genomes]
rs1419456	0.89[EUR][1000 genomes]
rs1419457	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs1419463	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1419466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17864092	1.00[JPT][hapmap]
rs2021162	1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs2109740	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2254259	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2254260	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2518946	0.92[EUR][1000 genomes]
rs2518948	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2518952	0.93[EUR][1000 genomes]
rs2518956	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2518959	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2535928	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2535937	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs2896388	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs916614	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126618200-126618600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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