Variant report

Variant	rs1155597
Chromosome Location	chr7:126613163-126613164
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126612202..126614471-chr7:126617154..126618998,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1003036	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap]
rs1010517	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs10234281	0.84[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs10236120	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs10236204	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs10236227	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs10265258	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs10275501	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs10487463	0.90[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs1121874	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11496163	0.85[ASN][1000 genomes]
rs1154324	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap]
rs1154325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap]
rs1155656	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11563513	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs11563801	0.90[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap]
rs1204563	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1204567	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1204569	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1204579	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1204583	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1204588	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1204593	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs1204594	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs1211384	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap]
rs12164089	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1361965	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1361968	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs1419438	0.90[CHB][hapmap];0.92[CHD][hapmap];0.93[JPT][hapmap]
rs1419465	0.96[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]
rs1419468	0.90[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs1419469	0.84[ASN][1000 genomes]
rs1419470	0.84[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs1419471	0.84[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap]
rs1548766	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1582255	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs17861376	1.00[CEU][hapmap]
rs1833069	0.82[EUR][1000 genomes]
rs2022072	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs2067052	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2072416	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2106188	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs2188188	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2215565	0.84[EUR][1000 genomes]
rs2237774	0.85[EUR][1000 genomes]
rs2237776	0.90[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap]
rs2518949	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2518954	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2518955	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2535926	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2535932	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs2535933	0.84[CHB][hapmap]
rs2535934	0.84[EUR][1000 genomes]
rs2535936	0.84[EUR][1000 genomes]
rs2535938	0.96[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes]
rs2535943	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2535944	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3808136	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs3808142	0.84[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs4728057	0.90[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap]
rs4728060	0.81[CHB][hapmap]
rs6950713	0.84[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs6975379	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs992169	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126613000-126613400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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