Variant report

Variant	rs11561931
Chromosome Location	chr7:104524092-104524093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:104523544..104525271-chr7:104558660..104559768,6	MCF-7	breast:
2	chr7:104523873..104524762-chr7:104976177..104976740,2	K562	blood:
3	chr7:104523003..104525584-chr7:105230453..105233041,2	K562	blood:
4	chr7:104523014..104525633-chr7:104652582..104654103,2	MCF-7	breast:
5	chr7:104523974..104524675-chr7:104558772..104559696,2	MCF-7	breast:
6	chr7:104523347..104526293-chr7:104526937..104529454,4	K562	blood:
7	chr7:104523942..104525943-chr7:104535712..104537774,2	K562	blood:
8	chr7:104523788..104524761-chr7:104558250..104559942,9	K562	blood:
9	chr7:104523961..104524718-chr7:104546923..104547448,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185055	Chromatin interaction
ENSG00000228393	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1075229	0.90[ASN][1000 genomes]
rs12665943	0.90[ASN][1000 genomes]
rs17706864	0.85[CEU][hapmap];0.91[CHB][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2041830	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs34477839	0.92[ASN][1000 genomes]
rs35514223	0.90[ASN][1000 genomes]
rs3815553	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs62485455	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7458894	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104509800-104524400	Weak transcription	Pancreas	Pancrea
2	chr7:104523200-104524200	Enhancers	HSMMtube	muscle
3	chr7:104523400-104524200	Enhancers	Brain Cingulate Gyrus	brain
4	chr7:104523400-104524400	Enhancers	Brain Anterior Caudate	brain
5	chr7:104523400-104524400	Enhancers	Fetal Intestine Small	intestine
6	chr7:104523600-104524200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:104523600-104524200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr7:104523600-104524400	Enhancers	Fetal Intestine Large	intestine
9	chr7:104523600-104524600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:104523600-104524600	Active TSS	Stomach Smooth Muscle	stomach
11	chr7:104523600-104524800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:104523600-104524800	Enhancers	Primary hematopoietic stem cells	blood
13	chr7:104523600-104524800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr7:104523600-104524800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:104523600-104524800	Enhancers	Fetal Kidney	kidney
16	chr7:104523800-104524400	Enhancers	Colonic Mucosa	Colon
17	chr7:104523800-104524400	Enhancers	Colon Smooth Muscle	Colon
18	chr7:104523800-104524400	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr7:104523800-104524400	Enhancers	Stomach Mucosa	stomach
20	chr7:104523800-104524400	Enhancers	GM12878-XiMat	blood
21	chr7:104523800-104524600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr7:104523800-104524600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:104523800-104524600	Enhancers	Brain Angular Gyrus	brain
24	chr7:104523800-104524600	Enhancers	HSMM	muscle
25	chr7:104523800-104524800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr7:104523800-104524800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr7:104523800-104524800	Flanking Active TSS	K562	blood
28	chr7:104523800-104524800	Enhancers	Osteobl	bone
29	chr7:104523800-104525000	Enhancers	Fetal Stomach	stomach
30	chr7:104523800-104526600	Enhancers	Fetal Muscle Leg	muscle
31	chr7:104524000-104524200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
32	chr7:104524000-104524200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:104524000-104524200	Enhancers	Primary T cells fromperipheralblood	blood
34	chr7:104524000-104524200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr7:104524000-104524200	Flanking Active TSS	Aorta	Aorta
36	chr7:104524000-104524200	Flanking Active TSS	Fetal Heart	heart
37	chr7:104524000-104524200	Flanking Active TSS	Rectal Smooth Muscle	rectum
38	chr7:104524000-104524200	Enhancers	Right Atrium	heart
39	chr7:104524000-104524400	Enhancers	Adipose Nuclei	Adipose
40	chr7:104524000-104524400	Enhancers	Duodenum Mucosa	Duodenum
41	chr7:104524000-104524400	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr7:104524000-104524400	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr7:104524000-104524400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr7:104524000-104524400	Enhancers	HUVEC	blood vessel
45	chr7:104524000-104524400	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr7:104524000-104524600	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr7:104524000-104524600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr7:104524000-104524600	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr7:104524000-104524600	Active TSS	Right Ventricle	heart
50	chr7:104524000-104524600	Enhancers	Small Intestine	intestine

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