Variant report

Variant	rs11563505
Chromosome Location	chr7:126699783-126699784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10268335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271115	1.00[CEU][hapmap]
rs10487464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10487465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10487466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11563503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11563749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11563755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11563756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11563757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11563758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11563759	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11563760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11563761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs11563762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap]
rs11563767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563768	1.00[CEU][hapmap]
rs11563769	1.00[CEU][hapmap]
rs11563771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap]
rs11563774	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11563782	0.83[AMR][1000 genomes]
rs11563787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11563788	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs12667596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12669516	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12670200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12670241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12670940	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs1419440	1.00[CEU][hapmap]
rs1419441	1.00[CEU][hapmap];0.91[GIH][hapmap]
rs17644601	0.89[AMR][1000 genomes]
rs17862270	0.85[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17862273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17862275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17862277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17862309	0.83[TSI][hapmap]
rs17863187	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17863198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17863199	1.00[CEU][hapmap]
rs17864094	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17864106	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17866413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17867742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs17867745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17867775	0.83[TSI][hapmap]
rs17868694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17874838	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2237781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2283089	0.91[CHB][hapmap];1.00[CHD][hapmap];0.85[ASN][1000 genomes]
rs2299526	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2402849	1.00[CEU][hapmap]
rs3779538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap]
rs3779539	1.00[CEU][hapmap]
rs3808129	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs3808130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs3808131	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs62468871	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62468872	0.94[EUR][1000 genomes]
rs6467106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6467107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6467108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6467109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6958658	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6962580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7795745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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