Variant report

Variant	rs11563510
Chromosome Location	chr7:126654051-126654052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:126651745-126656082..7:126890676-126899918	H1-hESC	embryonic stem cell:	embryo
2	7:126651745-126656082..7:126756671-126761022	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10464688	0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10954142	1.00[CEU][hapmap]
rs11563304	1.00[CEU][hapmap]
rs11563358	1.00[CEU][hapmap]
rs11563361	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11563500	1.00[CEU][hapmap]
rs11563730	1.00[CEU][hapmap]
rs11563742	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs11563744	1.00[CEU][hapmap]
rs11563745	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs11563776	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs11563791	1.00[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563792	1.00[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765785	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11771611	1.00[CEU][hapmap]
rs11971261	1.00[CEU][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12706758	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12706759	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs13239456	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs1419447	0.85[CEU][hapmap]
rs1468096	1.00[CEU][hapmap]
rs1468097	1.00[CEU][hapmap]
rs17862281	1.00[CEU][hapmap]
rs17863206	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs2023640	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs2188187	1.00[CEU][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2299524	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs4728062	1.00[CEU][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4728063	1.00[CEU][hapmap]
rs882894	1.00[CEU][hapmap]
rs916610	1.00[CEU][hapmap]
rs916611	0.96[CEU][hapmap]
rs916612	1.00[CEU][hapmap]
rs953016	1.00[CEU][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv608379	chr7:126643692-126657545	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv971543	chr7:126653280-126657192	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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