Variant report

Variant	rs11563750
Chromosome Location	chr7:126698351-126698352
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr7:126697990-126698356	HepG2	liver:	n/a	n/a
2	POLR2A	chr7:126698066-126698383	H1-neurons	neurons:	n/a	n/a
3	CREB1	chr7:126697948-126698411	H1-hESC	embryonic stem cell:	n/a	n/a
4	CEBPB	chr7:126697994-126698353	A549	lung:	n/a	n/a
5	FOXA2	chr7:126698065-126698362	A549	lung:	n/a	n/a
6	CEBPB	chr7:126698002-126698351	IMR90	lung:	n/a	n/a
7	CREB1	chr7:126698067-126698390	HepG2	liver:	n/a	n/a
8	CEBPB	chr7:126698067-126698370	MCF-7	breast:	n/a	n/a
9	CREB1	chr7:126697894-126698463	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:126698344-126698394	ProgFib	skin:	n/a
2	chr7:126698344-126698394	A549	lung:	n/a
3	chr7:126698344-126698394	HMEC	breast:	n/a
4	chr7:126698344-126698394	HRCEpiC	kidney:	n/a
5	chr7:126698344-126698394	SAEC	small airway:	n/a
6	chr7:126698344-126698394	HUVEC	blood vessel:	n/a
7	chr7:126698344-126698394	PrEC	prostate:	n/a
8	chr7:126698344-126698394	AG09319	gingival:	n/a
9	chr7:126698344-126698394	HL-60	blood:	n/a
10	chr7:126698344-126698394	RPTEC	kidney:	n/a
11	chr7:126698344-126698394	Hela-S3	cervix:	n/a
12	chr7:126698344-126698394	HCT-116	colon:	n/a
13	chr7:126698344-126698394	AG10803	skin:	n/a
14	chr7:126698344-126698394	SK-N-SH	brain:	n/a
15	chr7:126698344-126698394	ovcar-3	ovarian:	n/a
16	chr7:126698344-126698394	NB4	blood:	n/a
17	chr7:126698344-126698394	HAEpiC	amniotic membrane:	n/a
18	chr7:126698344-126698394	SK-N-MC	brain:	n/a
19	chr7:126698344-126698394	HPAEpiC	pulmonary alveolar:	n/a
20	chr7:126698344-126698394	HRPEpiC	eye:	n/a
21	chr7:126698344-126698394	SKMC	muscle:	n/a
22	chr7:126698344-126698394	HIPEpiC	eye:	n/a
23	chr7:126698344-126698394	HCPEpiC	choroid plexus:	n/a
24	chr7:126698344-126698394	BE2_C	brain:	n/a
25	chr7:126698344-126698394	NHBE	bronchial:	n/a
26	chr7:126698344-126698394	Hepatocyte	liver:	n/a
27	chr7:126698344-126698394	GM06990	blood:	n/a
28	chr7:126698344-126698394	HepG2	liver:	n/a
29	chr7:126698344-126698394	Jurkat	blood:	n/a
30	chr7:126698344-126698394	LNCaP	prostate:	n/a
31	chr7:126698344-126698394	HEK293	kidney:	embryo
32	chr7:126698344-126698394	AG04449	skin:	fetal
33	chr7:126698344-126698394	HCF	heart:	n/a
34	chr7:126698344-126698394	HEEpiC	esophagus:	n/a
35	chr7:126698344-126698394	U87	brain:	n/a
36	chr7:126698344-126698394	GM12892	blood:	n/a
37	chr7:126698344-126698394	GM12878	blood:	n/a
38	chr7:126698344-126698394	NT2-D1	testis:	n/a
39	chr7:126698344-126698394	GM19239	blood:	n/a
40	chr7:126698344-126698394	MCF-7	breast:	n/a
41	chr7:126698344-126698394	ECC-1	luminal epithelium:	n/a
42	chr7:126698344-126698394	BJ	skin:	n/a
43	chr7:126698344-126698394	SK-N-SH_RA	brain:	n/a
44	chr7:126698344-126698394	HNPCEpiC	eye:	n/a
45	chr7:126698344-126698394	PANC-1	pancreas:	n/a
46	chr7:126698344-126698394	NHDF-neo	bronchial:	n/a
47	chr7:126698344-126698394	AG04450	lung:	fetal
48	chr7:126698344-126698394	GM12891	blood:	n/a
49	chr7:126698344-126698394	NH-A	brain:	n/a
50	chr7:126698344-126698394	CMK	blood:	n/a

No data

Variant related genes	Relation type
MIR592	TF binding region
MIR592	CpG island

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10268335	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10271115	1.00[CEU][hapmap]
rs10487464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10487465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10487466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11563503	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11563505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563749	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11563755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11563756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11563757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11563758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11563759	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11563760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11563761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11563762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11563764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11563765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11563766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11563767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11563768	1.00[CEU][hapmap]
rs11563769	1.00[CEU][hapmap]
rs11563771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11563772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11563773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11563774	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs11563787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11563788	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs12667596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12669516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12670200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12670241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12670940	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1419440	1.00[CEU][hapmap]
rs1419441	1.00[CEU][hapmap]
rs17862270	0.87[CEU][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17862273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17862275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17862277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17863187	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17863198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17863199	1.00[CEU][hapmap]
rs17864094	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs17864106	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17866413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17867742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs17867745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17868694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17874838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2237781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes]
rs2283089	0.91[CHB][hapmap]
rs2299526	0.91[EUR][1000 genomes]
rs2402849	1.00[CEU][hapmap]
rs3779538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3779539	1.00[CEU][hapmap]
rs3808129	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs3808130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs3808131	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs62468871	0.97[EUR][1000 genomes]
rs62468872	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6467106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6467107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6467108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs6467109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6958658	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6962580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7795745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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