Variant report

Variant	rs11563782
Chromosome Location	chr7:126673838-126673839
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11563761	0.81[ASN][1000 genomes]
rs12334074	0.82[CEU][hapmap]
rs17644601	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs17862270	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17862293	1.00[CEU][hapmap]
rs17863187	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17863211	1.00[CEU][hapmap]
rs17863237	0.82[CEU][hapmap]
rs17864094	0.98[ASN][1000 genomes]
rs17864106	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17864127	1.00[CEU][hapmap]
rs17864142	0.82[CEU][hapmap]
rs17864153	0.82[CEU][hapmap]
rs17864154	0.82[CEU][hapmap]
rs17864156	0.82[CEU][hapmap]
rs17866153	0.82[CEU][hapmap]
rs17866742	0.82[CEU][hapmap]
rs17867759	1.00[CEU][hapmap]
rs17867764	1.00[CEU][hapmap]
rs17867770	1.00[CEU][hapmap]
rs17869212	1.00[CEU][hapmap]
rs2237781	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2237793	1.00[CEU][hapmap]
rs2299526	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs62468871	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62468872	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126671400-126674000	Weak transcription	Fetal Kidney	kidney
2	chr7:126673800-126674600	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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