Variant report

Variant	rs11569280
Chromosome Location	chr3:141677402-141677403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141676954..141678709-chr3:141680437..141684558,4	K562	blood:

Variant related genes	Relation type
ENSG00000114126	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11569284	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569287	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569294	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16852073	1.00[ASN][1000 genomes]
rs60029878	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72988270	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141629000-141739200	Weak transcription	Psoas Muscle	Psoas
2	chr3:141634200-141682000	Weak transcription	Brain Angular Gyrus	brain
3	chr3:141644800-141678400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr3:141659200-141696200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:141659400-141678400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:141659600-141678200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:141659600-141678200	Weak transcription	NHDF-Ad	bronchial
8	chr3:141659600-141678400	Weak transcription	A549	lung
9	chr3:141660600-141698200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr3:141666000-141697600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:141666400-141687200	Strong transcription	Dnd41	blood
12	chr3:141667000-141685600	Weak transcription	Brain Substantia Nigra	brain
13	chr3:141668000-141686600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr3:141668600-141678400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr3:141668600-141688600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr3:141669600-141696800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr3:141670000-141683600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:141670000-141684000	Weak transcription	Colonic Mucosa	Colon
19	chr3:141670200-141681200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr3:141671600-141677600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:141671600-141697400	Weak transcription	Gastric	stomach
22	chr3:141671800-141678000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:141671800-141681600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:141671800-141681800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr3:141671800-141682200	Weak transcription	Pancreas	Pancrea
26	chr3:141671800-141682400	Weak transcription	Lung	lung
27	chr3:141671800-141686400	Weak transcription	HepG2	liver
28	chr3:141671800-141691200	Weak transcription	Spleen	Spleen
29	chr3:141671800-141719000	Weak transcription	Placenta	Placenta
30	chr3:141671800-141724000	Weak transcription	Right Ventricle	heart
31	chr3:141671800-141735600	Weak transcription	Aorta	Aorta
32	chr3:141672000-141697000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr3:141672000-141700000	Weak transcription	Small Intestine	intestine
34	chr3:141672400-141681600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr3:141672400-141688600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:141674200-141678000	Weak transcription	HMEC	breast
37	chr3:141674400-141678200	Weak transcription	NHLF	lung
38	chr3:141674400-141678400	Weak transcription	Ovary	ovary
39	chr3:141674400-141678600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr3:141674400-141679200	Weak transcription	Brain Germinal Matrix	brain
41	chr3:141674400-141680800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:141674400-141682000	Weak transcription	Brain Hippocampus Middle	brain
43	chr3:141674400-141682200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr3:141674400-141688000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr3:141674400-141690200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr3:141674400-141708000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr3:141674600-141678000	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr3:141674600-141678000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr3:141674600-141678200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr3:141674600-141678200	Weak transcription	NH-A	brain

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