Variant report

Variant	rs11570082
Chromosome Location	chr11:47364189-47364190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47362701..47365249-chr11:47372942..47374468,2	K562	blood:
2	chr11:47359409..47362242-chr11:47362245..47364967,2	MCF-7	breast:
3	chr11:47362842..47365902-chr11:47366345..47370723,5	K562	blood:
4	chr11:47362758..47365324-chr11:47366232..47368748,4	MCF-7	breast:
5	chr11:47363419..47366259-chr11:47367466..47368974,2	MCF-7	breast:
6	chr11:47289590..47291966-chr11:47362403..47364981,2	K562	blood:
7	chr11:47204720..47207139-chr11:47362825..47364900,2	K562	blood:
8	chr11:47288601..47291966-chr11:47362403..47364981,3	K562	blood:
9	chr11:47358496..47361439-chr11:47361620..47365193,4	K562	blood:
10	chr11:47362680..47364496-chr11:47377424..47380369,2	K562	blood:
11	chr11:47362842..47364563-chr11:47366345..47368440,2	K562	blood:
12	chr11:47363652..47368436-chr11:47368498..47371185,5	K562	blood:
13	chr11:47363713..47366584-chr11:47446217..47448131,2	K562	blood:
14	chr11:47354148..47357317-chr11:47361021..47366088,5	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000165916	Chromatin interaction
ENSG00000134571	Chromatin interaction
ENSG00000165912	Chromatin interaction
ENSG00000025434	Chromatin interaction
ENSG00000110514	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11570045	1.00[CHB][hapmap]
rs11570060	1.00[CHB][hapmap]
rs11570113	1.00[CHB][hapmap]
rs12286241	1.00[CHB][hapmap]
rs2856655	1.00[CHB][hapmap]
rs3729799	1.00[CHB][hapmap]
rs3729952	1.00[CHB][hapmap]
rs4647751	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv917316	chr11:47232210-47448882	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	esv3330173	chr11:47289256-47450681	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	esv3416377	chr11:47289276-47450651	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv832141	chr11:47333180-47520993	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47343200-47370600	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:47351400-47375600	Weak transcription	Primary B cells from cord blood	blood
3	chr11:47352600-47366000	Weak transcription	Brain Germinal Matrix	brain
4	chr11:47353600-47375400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:47354000-47369800	Weak transcription	Right Atrium	heart
6	chr11:47354800-47372800	Weak transcription	Gastric	stomach
7	chr11:47356800-47367200	Strong transcription	Right Ventricle	heart
8	chr11:47361200-47364200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:47362400-47364600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:47363000-47366600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:47363600-47364200	Genic enhancers	Spleen	Spleen
12	chr11:47363600-47364400	Genic enhancers	Left Ventricle	heart
13	chr11:47364000-47364400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr11:47364000-47364600	Genic enhancers	Lung	lung
15	chr11:47364000-47364800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr11:47364000-47370600	Enhancers	Fetal Heart	heart
17	chr11:47364000-47372200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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