Variant report

Variant	rs11570123
Chromosome Location	chr11:47352470-47352471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47196984..47198613-chr11:47350804..47352943,2	MCF-7	breast:
2	chr11:47291226..47293092-chr11:47352052..47354178,2	K562	blood:
3	chr11:47352349..47353915-chr11:47361681..47363878,2	MCF-7	breast:
4	chr11:47350500..47353711-chr11:47353800..47358007,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110514	Chromatin interaction
ENSG00000149182	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12577643	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv917316	chr11:47232210-47448882	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	esv3330173	chr11:47289256-47450681	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	esv3416377	chr11:47289276-47450651	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv832141	chr11:47333180-47520993	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47294600-47355200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr11:47295400-47352600	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr11:47295800-47352800	Strong transcription	Duodenum Mucosa	Duodenum
4	chr11:47296000-47353600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:47324200-47354600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr11:47324800-47352600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:47325000-47352800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:47325400-47353000	Strong transcription	Fetal Intestine Small	intestine
9	chr11:47326000-47353600	Strong transcription	Fetal Stomach	stomach
10	chr11:47338800-47356200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:47339200-47353000	Weak transcription	NH-A	brain
12	chr11:47340200-47352800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:47342200-47353200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:47342400-47352600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:47342600-47352600	Strong transcription	Liver	Liver
16	chr11:47342600-47352600	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr11:47342600-47352600	Strong transcription	Placenta Amnion	Placenta Amnion
18	chr11:47342600-47353200	Strong transcription	Placenta	Placenta
19	chr11:47342800-47352600	Strong transcription	Brain Germinal Matrix	brain
20	chr11:47342800-47352800	Strong transcription	Brain Anterior Caudate	brain
21	chr11:47342800-47353000	Strong transcription	Fetal Intestine Large	intestine
22	chr11:47342800-47353600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:47343200-47352800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:47343200-47370600	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:47343800-47352800	Weak transcription	Fetal Brain Male	brain
26	chr11:47344800-47352600	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:47344800-47353000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:47345000-47352600	Strong transcription	NHLF	lung
29	chr11:47345000-47353000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:47347800-47352600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:47347800-47352600	Weak transcription	NHDF-Ad	bronchial
32	chr11:47347800-47353400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:47347800-47353400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:47347800-47354000	Weak transcription	HSMM	muscle
35	chr11:47347800-47354800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr11:47348000-47358200	Weak transcription	K562	blood
37	chr11:47348600-47355000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr11:47349200-47352600	Genic enhancers	Fetal Thymus	thymus
39	chr11:47349800-47354000	Genic enhancers	Fetal Muscle Trunk	muscle
40	chr11:47350400-47352800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr11:47350400-47353000	Genic enhancers	Fetal Muscle Leg	muscle
42	chr11:47350400-47353200	Genic enhancers	Adipose Nuclei	Adipose
43	chr11:47350400-47356800	Genic enhancers	Right Ventricle	heart
44	chr11:47350600-47353400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr11:47350800-47352600	Strong transcription	GM12878-XiMat	blood
46	chr11:47350800-47353000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr11:47350800-47353200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr11:47350800-47353200	Genic enhancers	Gastric	stomach
49	chr11:47350800-47354400	Genic enhancers	Left Ventricle	heart
50	chr11:47350800-47357400	Weak transcription	HepG2	liver

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