Variant report

Variant	rs11572572
Chromosome Location	chr1:217015602-217015603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12092524	1.00[AMR][1000 genomes]
rs1339351	1.00[AMR][1000 genomes]
rs1339353	1.00[AMR][1000 genomes]
rs1538527	1.00[AMR][1000 genomes]
rs1572741	1.00[AMR][1000 genomes]
rs2065805	1.00[AMR][1000 genomes]
rs2153238	1.00[AMR][1000 genomes]
rs2789714	1.00[AMR][1000 genomes]
rs2789715	1.00[AMR][1000 genomes]
rs2789724	1.00[AMR][1000 genomes]
rs2813701	1.00[AMR][1000 genomes]
rs2813709	1.00[AMR][1000 genomes]
rs2813710	1.00[AMR][1000 genomes]
rs2820880	1.00[AMR][1000 genomes]
rs946462	1.00[AMR][1000 genomes]
rs946463	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217006000-217038000	Weak transcription	Pancreas	Pancrea
2	chr1:217013400-217020400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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