Variant report

Variant	rs11572654
Chromosome Location	chr1:216922557-216922558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12042592	1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17043567	1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17043642	1.00[YRI][hapmap]
rs17043697	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs61819765	0.85[AMR][1000 genomes]
rs6671659	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs72737402	0.85[AMR][1000 genomes]
rs7521774	1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs954276	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508694	chr1:216901014-216923883	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216897400-216958600	Weak transcription	Pancreas	Pancrea
2	chr1:216911600-216934200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216914400-216923400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:216919000-216922800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:216921600-216923000	Enhancers	Fetal Stomach	stomach
6	chr1:216921600-216925000	Enhancers	Fetal Heart	heart
7	chr1:216922000-216922800	Enhancers	Ovary	ovary
8	chr1:216922000-216923000	Enhancers	Fetal Muscle Leg	muscle
9	chr1:216922400-216922600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr1:216922400-216925400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:216922400-216931400	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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