Variant report

Variant	rs11572672
Chromosome Location	chr1:216880662-216880663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10495033	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10746365	1.00[CHB][hapmap];0.89[CHD][hapmap]
rs12033378	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12034601	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12037068	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1339344	0.93[CHB][hapmap]
rs1416611	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1416612	0.82[CHB][hapmap]
rs17043513	0.89[ASW][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1856520	1.00[CHB][hapmap]
rs2789725	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs2820883	0.93[CHB][hapmap];0.80[CHD][hapmap];0.81[ASN][1000 genomes]
rs2820884	0.82[CHB][hapmap]
rs4426040	0.82[CHB][hapmap]
rs55843945	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60800969	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73092176	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7529655	0.85[CHD][hapmap];0.82[GIH][hapmap];0.87[TSI][hapmap]
rs946467	0.82[CHB][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216868200-216894000	Weak transcription	Placenta	Placenta
2	chr1:216879400-216880800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:216879400-216883200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:216879400-216888400	Weak transcription	Gastric	stomach
5	chr1:216879600-216883400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:216879600-216883400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:216879800-216881800	Weak transcription	Fetal Heart	heart
8	chr1:216880000-216883400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:216880600-216883200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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