Variant report

Variant	rs11572740
Chromosome Location	chr1:216765905-216765906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11572717	1.00[AMR][1000 genomes]
rs11572728	1.00[AMR][1000 genomes]
rs11572730	1.00[AMR][1000 genomes]
rs11572785	1.00[AMR][1000 genomes]
rs11572838	1.00[AMR][1000 genomes]
rs12239412	1.00[AMR][1000 genomes]
rs12239416	1.00[AMR][1000 genomes]
rs13374943	1.00[AMR][1000 genomes]
rs13375077	1.00[AMR][1000 genomes]
rs1498291	1.00[AMR][1000 genomes]
rs1857402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28515906	1.00[AMR][1000 genomes]
rs6678051	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6682620	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6685419	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6693114	1.00[AMR][1000 genomes]
rs7530898	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1003815	chr1:216504235-216836498	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv535289	chr1:216504235-216836498	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv873178	chr1:216714314-216813244	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216721800-216774000	Weak transcription	Placenta	Placenta
2	chr1:216755200-216767800	Weak transcription	Fetal Heart	heart
3	chr1:216757400-216773600	Weak transcription	Fetal Intestine Small	intestine
4	chr1:216764800-216769400	Weak transcription	Left Ventricle	heart
5	chr1:216764800-216773400	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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