Variant report

Variant	rs11576868
Chromosome Location	chr1:220604048-220604049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10863556	0.80[AFR][1000 genomes]
rs11118554	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11582548	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568969	0.92[CHB][hapmap]
rs1361256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933881	0.92[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs6685446	0.92[CHB][hapmap]
rs6686532	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512221	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220601000-220604800	Weak transcription	Adipose Nuclei	Adipose
2	chr1:220603000-220606000	Enhancers	Hela-S3	cervix
3	chr1:220603200-220606000	Enhancers	Placenta	Placenta
4	chr1:220603600-220605000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:220603600-220605000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:220603800-220605000	Weak transcription	Fetal Heart	heart
7	chr1:220603800-220605200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:220603800-220605600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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