Variant report

Variant	rs11578344
Chromosome Location	chr1:71172388-71172389
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs11209706	0.85[AMR][1000 genomes]
rs12122560	0.85[AMR][1000 genomes]
rs12145361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1327456	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs6685546	0.85[AMR][1000 genomes]

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71171600-71172800	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr1:71171800-71172400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
3	chr1:71171800-71172800	Active TSS	H1 Cell Line	embryonic stem cell
4	chr1:71171800-71172800	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr1:71171800-71172800	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr1:71171800-71172800	Active TSS	Right Ventricle	heart
7	chr1:71171800-71173000	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr1:71171800-71173000	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr1:71171800-71173000	Active TSS	Fetal Kidney	kidney
10	chr1:71171800-71173200	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr1:71172000-71172400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:71172000-71172400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:71172000-71172400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:71172000-71172400	Active TSS	Brain Germinal Matrix	brain
15	chr1:71172000-71172400	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr1:71172000-71172400	Flanking Bivalent TSS/Enh	Left Ventricle	heart
17	chr1:71172000-71172400	Flanking Active TSS	Psoas Muscle	Psoas
18	chr1:71172000-71172600	Bivalent/Poised TSS	Brain Angular Gyrus	brain
19	chr1:71172000-71172600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
20	chr1:71172000-71172600	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
21	chr1:71172000-71172600	Active TSS	Fetal Brain Female	brain
22	chr1:71172000-71172600	Active TSS	Gastric	stomach
23	chr1:71172000-71172600	Flanking Active TSS	Pancreas	Pancrea
24	chr1:71172000-71172600	Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr1:71172000-71172600	Active TSS	Stomach Smooth Muscle	stomach
26	chr1:71172000-71172600	Bivalent/Poised TSS	A549	lung
27	chr1:71172000-71172600	ZNF genes & repeats	HSMM	muscle
28	chr1:71172000-71172600	Active TSS	NH-A	brain
29	chr1:71172000-71172600	Active TSS	NHDF-Ad	bronchial
30	chr1:71172000-71172800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr1:71172000-71172800	Active TSS	H9 Cell Line	embryonic stem cell
32	chr1:71172000-71172800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr1:71172000-71172800	Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr1:71172000-71172800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr1:71172000-71172800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr1:71172000-71172800	Active TSS	Muscle Satellite Cultured Cells	--
37	chr1:71172000-71172800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
38	chr1:71172000-71172800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr1:71172000-71172800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr1:71172000-71172800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr1:71172000-71172800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr1:71172000-71172800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr1:71172000-71172800	Active TSS	Adipose Nuclei	Adipose
44	chr1:71172000-71172800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
45	chr1:71172000-71172800	Bivalent/Poised TSS	Brain Substantia Nigra	brain
46	chr1:71172000-71172800	Flanking Active TSS	Fetal Muscle Trunk	muscle
47	chr1:71172000-71172800	Active TSS	Fetal Stomach	stomach
48	chr1:71172000-71172800	Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr1:71172000-71172800	Active TSS	Osteobl	bone
50	chr1:71172000-71173000	Active TSS	HUES48 Cell Line	embryonic stem cell

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