Variant report

Variant	rs11578614
Chromosome Location	chr1:211771537-211771538
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211752607..211754839-chr1:211771160..211773503,2	K562	blood:
2	chr1:211764016..211768731-chr1:211768736..211774092,7	K562	blood:
3	chr1:211752607..211756285-chr1:211771490..211773503,3	K562	blood:
4	chr1:211770787..211772402-chr1:212434054..212436587,2	K562	blood:
5	chr1:211769278..211771749-chr1:211790049..211793183,3	K562	blood:
6	chr1:211750618..211753535-chr1:211771305..211773217,2	MCF-7	breast:
7	chr1:211770870..211774910-chr1:211776208..211782840,10	K562	blood:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11119794	1.00[CHB][hapmap]
rs12074002	1.00[CHB][hapmap]
rs12561861	1.00[CHB][hapmap]
rs17017716	1.00[CHB][hapmap]
rs2184844	1.00[CHB][hapmap]
rs2794731	1.00[CHB][hapmap]
rs6659316	1.00[CHB][hapmap]
rs6661565	1.00[CHB][hapmap]
rs701926	1.00[CHB][hapmap]
rs7511687	1.00[CHB][hapmap]
rs7516189	1.00[CHB][hapmap]
rs7526891	1.00[CHB][hapmap]
rs7527002	1.00[CHB][hapmap]
rs7539988	1.00[CHB][hapmap]
rs7554588	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211757400-211775200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:211766000-211772200	Weak transcription	Placenta	Placenta
3	chr1:211768600-211771800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:211768600-211772400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr1:211769800-211772200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:211770000-211771800	Enhancers	Osteobl	bone
7	chr1:211770200-211775200	Weak transcription	Fetal Intestine Large	intestine
8	chr1:211770400-211771800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:211770600-211771600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr1:211770600-211771600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:211770600-211771800	Enhancers	NHDF-Ad	bronchial
12	chr1:211770600-211773000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:211770600-211775400	Weak transcription	Liver	Liver
14	chr1:211770800-211771800	Enhancers	NHLF	lung
15	chr1:211770800-211772200	Weak transcription	HepG2	liver
16	chr1:211771200-211771600	Enhancers	GM12878-XiMat	blood
17	chr1:211771200-211771600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr1:211771400-211771600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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