The 2.0 version of rSNPBase

Variant report

Variant rs11578986
Chromosome Location chr1:93402823-93402824
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93366400-93409200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr1:93388200-93408800 Weak transcription Pancreas Pancrea
3 chr1:93391200-93408800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr1:93395000-93407200 Weak transcription Small Intestine intestine
5 chr1:93395400-93408800 Weak transcription Stomach Mucosa stomach
6 chr1:93395800-93405200 Weak transcription Ovary ovary
7 chr1:93395800-93408800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
8 chr1:93398200-93403600 Enhancers Primary T helper cells PMA-I stimulated --
9 chr1:93398800-93403600 Enhancers NHDF-Ad bronchial
10 chr1:93399000-93403600 Enhancers Brain Hippocampus Middle brain
11 chr1:93399200-93403200 Enhancers Primary T helper naive cells fromperipheralblood blood
12 chr1:93399200-93403600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
13 chr1:93399200-93410200 Weak transcription Right Ventricle heart
14 chr1:93399400-93403000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
15 chr1:93399600-93408800 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr1:93400400-93408800 Weak transcription Psoas Muscle Psoas
17 chr1:93400400-93410200 Weak transcription Primary T regulatory cells fromperipheralblood blood
18 chr1:93400400-93416600 Weak transcription Fetal Intestine Small intestine
19 chr1:93400600-93407200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr1:93400600-93407800 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr1:93400600-93410400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
22 chr1:93400800-93403000 Weak transcription Breast Myoepithelial Primary Cells Breast
23 chr1:93400800-93403000 Weak transcription Brain Inferior Temporal Lobe brain
24 chr1:93400800-93403200 Enhancers Colon Smooth Muscle Colon
25 chr1:93400800-93403200 Weak transcription Duodenum Mucosa Duodenum
26 chr1:93400800-93403600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr1:93400800-93403600 Enhancers Osteobl bone
28 chr1:93400800-93404200 Enhancers Liver Liver
29 chr1:93400800-93405000 Weak transcription Brain Angular Gyrus brain
30 chr1:93400800-93405200 Weak transcription Aorta Aorta
31 chr1:93400800-93405200 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr1:93400800-93405600 Weak transcription Muscle Satellite Cultured Cells --
33 chr1:93400800-93405600 Weak transcription Stomach Smooth Muscle stomach
34 chr1:93400800-93408400 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr1:93400800-93408800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr1:93400800-93421800 Weak transcription Fetal Lung lung
37 chr1:93401000-93403600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr1:93401200-93405600 Weak transcription NH-A brain
39 chr1:93401200-93406000 Weak transcription HMEC breast
40 chr1:93401400-93403000 Weak transcription Primary T helper naive cells from peripheral blood blood
41 chr1:93401400-93403000 Weak transcription Brain Anterior Caudate brain
42 chr1:93401400-93405600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr1:93401600-93403400 Weak transcription Primary T helper cells fromperipheralblood blood
44 chr1:93401600-93405000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr1:93401600-93406200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr1:93401600-93407000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr1:93401600-93407400 Weak transcription Rectal Smooth Muscle rectum
48 chr1:93401800-93403200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr1:93401800-93406000 Weak transcription NHEK skin
50 chr1:93401800-93407200 Weak transcription Brain Germinal Matrix brain

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Last update: Aug 31, 2015