Variant report

Variant	rs11580042
Chromosome Location	chr1:172810806-172810807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10912487	0.82[AMR][1000 genomes]
rs17371133	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4916197	0.85[ASN][1000 genomes]
rs57701379	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828367	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11580042	MPZL1	cis	parietal	SCAN
rs11580042	C1orf114	cis	parietal	SCAN
rs11580042	SNORD45A	trans	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172796000-172813800	Weak transcription	Small Intestine	intestine
2	chr1:172808200-172813600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:172808200-172813800	Weak transcription	Primary T cells from cord blood	blood
4	chr1:172808200-172813800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:172808200-172814600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:172808400-172813600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr1:172808400-172813600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:172808400-172813800	Weak transcription	Dnd41	blood
9	chr1:172808800-172813600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:172808800-172813600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr1:172808800-172813800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr1:172808800-172814400	Weak transcription	HSMMtube	muscle
13	chr1:172809600-172813600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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