Variant report

Variant	rs11582440
Chromosome Location	chr1:211123969-211123970
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210547492..210548995-chr1:211123533..211125722,2	K562	blood:
2	chr1:211123403..211124195-chr1:211307181..211308094,2	MCF-7	breast:
3	chr1:211123370..211124075-chr1:211307428..211308085,3	K562	blood:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction
ENSG00000143473	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10494931	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10494932	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11119658	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11578692	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11579078	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11582507	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11583101	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11588573	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12074568	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12121565	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12722738	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12750762	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12751504	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12752336	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12756697	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12760791	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1393028	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1501558	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1501560	0.92[ASN][1000 genomes]
rs17188741	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17188748	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2134108	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2221250	0.80[AMR][1000 genomes]
rs33985151	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34773128	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34827659	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35019263	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4638187	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61850226	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6683856	0.92[ASN][1000 genomes]
rs6697578	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6702598	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7414286	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7519090	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9662051	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211112200-211124000	Weak transcription	HSMMtube	muscle
2	chr1:211112800-211124800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:211123000-211152000	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links