Variant report

Variant	rs11583745
Chromosome Location	chr1:215389609-215389610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10864165	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10864166	0.96[CEU][hapmap];0.86[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10864169	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11120519	0.96[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes]
rs11120524	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11120530	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11120533	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11120539	0.87[EUR][1000 genomes]
rs11120541	0.87[EUR][1000 genomes]
rs11120542	0.87[EUR][1000 genomes]
rs11120581	0.88[CEU][hapmap];0.98[TSI][hapmap]
rs11588455	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12026669	0.82[EUR][1000 genomes]
rs12026702	0.89[EUR][1000 genomes]
rs12037855	0.90[EUR][1000 genomes]
rs12038616	0.85[CEU][hapmap]
rs12038695	0.85[CEU][hapmap]
rs12044688	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12047082	0.91[EUR][1000 genomes]
rs12049601	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12407482	0.81[EUR][1000 genomes]
rs12740245	0.96[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap]
rs12750276	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12752882	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12753507	0.96[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap]
rs1339401	0.87[EUR][1000 genomes]
rs1416653	0.85[EUR][1000 genomes]
rs1416654	0.85[EUR][1000 genomes]
rs1416655	0.85[EUR][1000 genomes]
rs1416661	0.90[EUR][1000 genomes]
rs1538544	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1538547	0.92[CEU][hapmap]
rs1556905	0.80[CHB][hapmap]
rs17024500	0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs2027320	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2153244	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3933352	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4098470	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4098471	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4233309	0.88[CEU][hapmap]
rs4446938	0.83[EUR][1000 genomes]
rs4655397	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4655398	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4655399	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4655400	0.90[EUR][1000 genomes]
rs5025775	0.96[CEU][hapmap];0.86[CHB][hapmap]
rs6540886	0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6540887	0.96[CEU][hapmap];0.82[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6670661	0.96[CEU][hapmap];0.86[CHB][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6674743	0.83[EUR][1000 genomes]
rs7522160	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7522552	0.85[CEU][hapmap]
rs7531046	0.85[EUR][1000 genomes]
rs946487	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs946488	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs946489	0.91[EUR][1000 genomes]
rs946490	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	nsv873170	chr1:215367248-215440975	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215380600-215408000	Weak transcription	Osteobl	bone
2	chr1:215384800-215391200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:215388200-215389800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:215388600-215408200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:215389000-215390400	Enhancers	HSMMtube	muscle
6	chr1:215389200-215390400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:215389200-215401400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:215389400-215393400	Weak transcription	NHDF-Ad	bronchial
9	chr1:215389600-215390000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:215389600-215390000	Weak transcription	Fetal Muscle Leg	muscle

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