The 2.0 version of rSNPBase

Variant report

Variant rs11587920
Chromosome Location chr1:93402173-93402174
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93366400-93409200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr1:93388200-93408800 Weak transcription Pancreas Pancrea
3 chr1:93390400-93402200 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr1:93391200-93408800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr1:93395000-93407200 Weak transcription Small Intestine intestine
6 chr1:93395400-93408800 Weak transcription Stomach Mucosa stomach
7 chr1:93395800-93405200 Weak transcription Ovary ovary
8 chr1:93395800-93408800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
9 chr1:93398200-93403600 Enhancers Primary T helper cells PMA-I stimulated --
10 chr1:93398800-93402600 Enhancers NHLF lung
11 chr1:93398800-93403600 Enhancers NHDF-Ad bronchial
12 chr1:93399000-93403600 Enhancers Brain Hippocampus Middle brain
13 chr1:93399200-93402400 Enhancers Fetal Brain Male brain
14 chr1:93399200-93403200 Enhancers Primary T helper naive cells fromperipheralblood blood
15 chr1:93399200-93403600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
16 chr1:93399200-93410200 Weak transcription Right Ventricle heart
17 chr1:93399400-93403000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
18 chr1:93399600-93402200 Weak transcription Fetal Intestine Large intestine
19 chr1:93399600-93408800 Weak transcription Rectal Mucosa Donor 31 rectum
20 chr1:93399800-93402600 Enhancers Adipose Nuclei Adipose
21 chr1:93400000-93402600 Enhancers Primary T cells from cord blood blood
22 chr1:93400400-93408800 Weak transcription Psoas Muscle Psoas
23 chr1:93400400-93410200 Weak transcription Primary T regulatory cells fromperipheralblood blood
24 chr1:93400400-93416600 Weak transcription Fetal Intestine Small intestine
25 chr1:93400600-93407200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
26 chr1:93400600-93407800 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr1:93400600-93410400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
28 chr1:93400800-93402200 Weak transcription Brain Cingulate Gyrus brain
29 chr1:93400800-93402400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr1:93400800-93402800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
31 chr1:93400800-93403000 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr1:93400800-93403000 Weak transcription Brain Inferior Temporal Lobe brain
33 chr1:93400800-93403200 Enhancers Colon Smooth Muscle Colon
34 chr1:93400800-93403200 Weak transcription Duodenum Mucosa Duodenum
35 chr1:93400800-93403600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr1:93400800-93403600 Enhancers Osteobl bone
37 chr1:93400800-93404200 Enhancers Liver Liver
38 chr1:93400800-93405000 Weak transcription Brain Angular Gyrus brain
39 chr1:93400800-93405200 Weak transcription Aorta Aorta
40 chr1:93400800-93405200 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr1:93400800-93405600 Weak transcription Muscle Satellite Cultured Cells --
42 chr1:93400800-93405600 Weak transcription Stomach Smooth Muscle stomach
43 chr1:93400800-93408400 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr1:93400800-93408800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr1:93400800-93421800 Weak transcription Fetal Lung lung
46 chr1:93401000-93403600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr1:93401200-93402200 Weak transcription Primary B cells from peripheral blood blood
48 chr1:93401200-93402200 Weak transcription GM12878-XiMat blood
49 chr1:93401200-93405600 Weak transcription NH-A brain
50 chr1:93401200-93406000 Weak transcription HMEC breast

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Last update: Aug 31, 2015