Variant report

Variant	rs1159834
Chromosome Location	chr1:94426771-94426772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94424709..94427125-chr1:94437508..94439049,2	MCF-7	breast:
2	chr1:94373743..94375409-chr1:94425249..94427408,2	MCF-7	breast:
3	chr1:94426167..94428769-chr1:94429812..94431892,2	K562	blood:

Variant related genes	Relation type
ENSG00000023909	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12407172	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61597540	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs714096	1.00[AMR][1000 genomes]
rs74102018	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7530845	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7550770	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94422600-94445000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:94423000-94427200	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr1:94423600-94430800	Weak transcription	Pancreas	Pancrea
4	chr1:94423600-94433200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:94423600-94434800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:94423800-94429400	Weak transcription	Aorta	Aorta
7	chr1:94424800-94427600	Enhancers	HepG2	liver
8	chr1:94425600-94427600	Enhancers	NHEK	skin
9	chr1:94425600-94427800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr1:94425600-94428400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:94425600-94429800	Enhancers	Liver	Liver
12	chr1:94425600-94435600	Enhancers	HMEC	breast
13	chr1:94425800-94431200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:94426000-94427200	Enhancers	Fetal Intestine Large	intestine
15	chr1:94426000-94427400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:94426200-94426800	Enhancers	Esophagus	oesophagus
17	chr1:94426200-94426800	Enhancers	Osteobl	bone
18	chr1:94426200-94427200	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr1:94426200-94427800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:94426200-94432400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:94426400-94430200	Weak transcription	Placenta	Placenta
22	chr1:94426600-94428800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:94426600-94428800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:94426600-94430200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:94426600-94431200	Weak transcription	Psoas Muscle	Psoas

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