Variant report

Variant	rs11600183
Chromosome Location	chr11:9699059-9699060
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:9699000-9699150	AG10803	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9694330..9696170-chr11:9697340..9699086,2	MCF-7	breast:
2	chr11:9699028..9701927-chr11:9751851..9754030,2	K562	blood:

Variant related genes	Relation type
RN7SKP50	TF binding region

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10840283	1.00[ASN][1000 genomes]
rs10840284	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10840285	0.87[CEU][hapmap]
rs10840286	1.00[ASN][1000 genomes]
rs10840287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042411	1.00[YRI][hapmap]
rs11042439	0.86[CEU][hapmap]
rs11042440	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs11042441	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs11042457	1.00[ASN][1000 genomes]
rs11042462	1.00[ASN][1000 genomes]
rs11042464	1.00[ASN][1000 genomes]
rs11042466	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11042467	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042486	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11042500	1.00[CHB][hapmap]
rs11042511	1.00[CHB][hapmap]
rs11601008	1.00[ASN][1000 genomes]
rs11603527	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607321	1.00[ASN][1000 genomes]
rs11607900	1.00[ASN][1000 genomes]
rs12362879	1.00[ASN][1000 genomes]
rs12364089	1.00[ASN][1000 genomes]
rs12421878	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12786236	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12789209	1.00[ASN][1000 genomes]
rs12789429	1.00[ASN][1000 genomes]
rs12794270	1.00[ASN][1000 genomes]
rs12797744	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801958	1.00[ASN][1000 genomes]
rs12803440	1.00[ASN][1000 genomes]
rs12805683	1.00[ASN][1000 genomes]
rs12807017	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12808226	1.00[CHB][hapmap]
rs17268632	1.00[CHB][hapmap]
rs34063054	1.00[ASN][1000 genomes]
rs35806232	1.00[ASN][1000 genomes]
rs36089180	1.00[ASN][1000 genomes]
rs4910060	1.00[ASN][1000 genomes]
rs4910486	1.00[ASN][1000 genomes]
rs4910487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4910488	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910492	1.00[ASN][1000 genomes]
rs4910493	1.00[ASN][1000 genomes]
rs4910497	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4910505	1.00[CHB][hapmap]
rs56043731	1.00[ASN][1000 genomes]
rs67867011	1.00[ASN][1000 genomes]
rs7120616	1.00[YRI][hapmap]
rs72852112	1.00[ASN][1000 genomes]
rs7943610	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9686600-9702000	Weak transcription	Left Ventricle	heart
2	chr11:9686600-9702600	Weak transcription	Gastric	stomach
3	chr11:9686600-9704600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:9686600-9709600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:9686600-9711200	Weak transcription	Esophagus	oesophagus
6	chr11:9686800-9710800	Weak transcription	Aorta	Aorta
7	chr11:9686800-9716400	Weak transcription	Ovary	ovary
8	chr11:9687200-9702600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:9687200-9705000	Weak transcription	HSMM	muscle
10	chr11:9687200-9709400	Weak transcription	HSMMtube	muscle
11	chr11:9687200-9710200	Weak transcription	Hela-S3	cervix
12	chr11:9687400-9702600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:9687400-9709200	Weak transcription	HMEC	breast
14	chr11:9687400-9710800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:9687600-9700200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:9687800-9703200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr11:9687800-9708000	Weak transcription	Pancreas	Pancrea
18	chr11:9687800-9709000	Weak transcription	Adipose Nuclei	Adipose
19	chr11:9688000-9702400	Weak transcription	Fetal Stomach	stomach
20	chr11:9688200-9710000	Weak transcription	A549	lung
21	chr11:9689000-9703000	Weak transcription	Fetal Intestine Large	intestine
22	chr11:9689400-9706800	Weak transcription	Placenta	Placenta
23	chr11:9693200-9710000	Weak transcription	Fetal Thymus	thymus
24	chr11:9693800-9702400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:9694200-9702000	Weak transcription	Fetal Intestine Small	intestine
26	chr11:9694200-9702400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:9694400-9703200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr11:9694800-9702400	Weak transcription	Right Ventricle	heart
29	chr11:9694800-9702400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:9694800-9709200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:9695000-9703200	Weak transcription	Fetal Heart	heart
32	chr11:9695000-9709200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:9695000-9709400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:9695000-9709400	Weak transcription	NHLF	lung
35	chr11:9695200-9705000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:9695200-9709800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:9695400-9699400	Weak transcription	NH-A	brain
38	chr11:9695400-9709200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:9695600-9700200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:9695600-9700200	Weak transcription	Right Atrium	heart
41	chr11:9696000-9703200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:9696200-9709600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:9696600-9700400	Weak transcription	Small Intestine	intestine
44	chr11:9696800-9699600	Enhancers	Primary B cells from cord blood	blood
45	chr11:9697000-9703800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:9697000-9709800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr11:9697400-9700200	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr11:9697400-9700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr11:9697400-9700200	Weak transcription	Psoas Muscle	Psoas
50	chr11:9697400-9702400	Weak transcription	Lung	lung

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