Variant report

Variant	rs11601002
Chromosome Location	chr11:18251300-18251301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10766463	0.85[AMR][1000 genomes]
rs10832904	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10832908	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs11024553	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11024562	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11024563	0.81[AMR][1000 genomes]
rs11024566	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11024574	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11024576	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11024577	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs11024578	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs12361253	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12364058	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12364776	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12791694	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1915391	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2168363	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs4757627	0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4757628	0.82[AMR][1000 genomes]
rs4757629	0.82[AMR][1000 genomes]
rs4757630	0.82[AMR][1000 genomes]
rs67006796	0.82[AMR][1000 genomes]
rs67712345	0.82[AMR][1000 genomes]
rs7103794	0.82[AMR][1000 genomes]
rs7117484	0.82[AMR][1000 genomes]
rs7117890	0.82[AMR][1000 genomes]
rs72881516	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7935726	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18247000-18252200	Weak transcription	Liver	Liver
2	chr11:18249800-18251800	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:18250400-18257000	Enhancers	HepG2	liver
4	chr11:18251200-18253200	Weak transcription	Primary B cells from cord blood	blood

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