Variant report

Variant	rs11601472
Chromosome Location	chr11:33698816-33698817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10836094	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10836095	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10836097	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1096557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11032332	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11032335	0.85[EUR][1000 genomes]
rs11032338	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12226271	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12280103	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12574994	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1321015	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1321016	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2295064	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3741020	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3741021	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3781839	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7101438	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs831622	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11601472	C11orf41	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33674800-33700000	Weak transcription	Brain Angular Gyrus	brain
2	chr11:33691000-33701600	Weak transcription	Gastric	stomach
3	chr11:33691000-33712400	Weak transcription	Psoas Muscle	Psoas
4	chr11:33691800-33704200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:33693000-33699600	Weak transcription	Brain Germinal Matrix	brain
6	chr11:33693000-33700000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:33693000-33703400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:33693800-33703800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:33694000-33713600	Weak transcription	Fetal Brain Female	brain
10	chr11:33694400-33704600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:33696400-33704000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:33696600-33699400	Weak transcription	HSMMtube	muscle
13	chr11:33696800-33703800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:33697600-33705200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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