Variant report

Variant	rs11601694
Chromosome Location	chr11:47614575-47614576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47573328..47575727-chr11:47613436..47615022,2	MCF-7	breast:
2	chr11:47612536..47615119-chr11:47621366..47624044,3	MCF-7	breast:
3	chr11:47613544..47615870-chr11:47616778..47619516,2	K562	blood:
4	chr11:47612835..47615053-chr11:47623359..47624985,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149187	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7123576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv825872	chr11:47565425-47660330	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv825873	chr11:47609306-47616463	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47606200-47614600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:47607000-47632800	Weak transcription	Dnd41	blood
3	chr11:47609200-47614800	Weak transcription	Brain Angular Gyrus	brain
4	chr11:47609400-47614600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:47612200-47615000	Weak transcription	Gastric	stomach
6	chr11:47612200-47615000	Weak transcription	Spleen	Spleen
7	chr11:47612200-47615400	Weak transcription	Pancreas	Pancrea
8	chr11:47612200-47615600	Weak transcription	Right Atrium	heart
9	chr11:47612200-47615600	Weak transcription	Right Ventricle	heart
10	chr11:47612600-47615200	Weak transcription	Ovary	ovary
11	chr11:47612600-47615400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr11:47613000-47615600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:47613400-47614800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:47613400-47615400	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr11:47613400-47616200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
16	chr11:47613600-47614600	Enhancers	Brain Anterior Caudate	brain
17	chr11:47613800-47614600	Enhancers	Primary hematopoietic stem cells	blood
18	chr11:47613800-47614800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
19	chr11:47613800-47614800	Bivalent Enhancer	HepG2	liver
20	chr11:47614000-47614800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
21	chr11:47614000-47615000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:47614000-47615000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:47614000-47615400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:47614200-47614600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:47614200-47614600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:47614400-47614600	Enhancers	Fetal Brain Male	brain
27	chr11:47614400-47614600	Flanking Active TSS	Fetal Brain Female	brain
28	chr11:47614400-47615000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:47614400-47616200	Bivalent Enhancer	Fetal Thymus	thymus

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