Variant report

Variant	rs11601798
Chromosome Location	chr11:47158392-47158393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10466478	0.85[CHB][hapmap]
rs10501319	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1060573	0.85[CHB][hapmap]
rs10742797	0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs10769225	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[ASN][1000 genomes]
rs10769226	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10769227	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[ASN][1000 genomes]
rs10769228	0.84[ASN][1000 genomes]
rs10769234	0.81[CHB][hapmap]
rs10769248	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10838640	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10838641	0.84[ASN][1000 genomes]
rs10838644	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[ASN][1000 genomes]
rs10838646	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[ASN][1000 genomes]
rs10838652	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838658	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838660	0.85[CHB][hapmap]
rs10838662	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838663	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10838664	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11039035	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11039074	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs11039080	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039081	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11039097	0.85[CHB][hapmap]
rs11039098	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11039105	0.85[CHB][hapmap]
rs11039112	0.85[CHB][hapmap]
rs11039119	0.85[CHB][hapmap]
rs11600292	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs11600668	0.85[CHB][hapmap]
rs11602250	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs11603373	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12224096	0.81[CHB][hapmap]
rs12417519	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12574410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12796744	0.85[CHB][hapmap]
rs17790204	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1872896	0.85[CHB][hapmap]
rs2029298	0.80[CHB][hapmap]
rs2087215	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2279438	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2279439	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3758666	0.87[ASN][1000 genomes]
rs3758667	0.82[ASN][1000 genomes]
rs3922684	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4269876	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4315028	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4394802	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4494268	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4498951	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4528282	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4548577	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4567413	0.80[CHB][hapmap]
rs4576779	0.96[ASN][1000 genomes]
rs4581406	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4587689	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4752815	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[ASN][1000 genomes]
rs4752816	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs4752951	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4752957	0.85[CHB][hapmap]
rs4752962	0.81[CHB][hapmap]
rs4752965	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4752967	0.81[CHB][hapmap]
rs4752968	0.90[ASN][1000 genomes]
rs4752969	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896133	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896136	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897787	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61897844	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61897857	0.87[ASN][1000 genomes]
rs6485715	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6485716	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6485726	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6485739	0.85[CHB][hapmap]
rs7103581	0.85[CHB][hapmap]
rs7108822	0.87[YRI][hapmap];0.88[ASN][1000 genomes]
rs7108902	0.85[CHB][hapmap]
rs7111270	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7112854	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7114683	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7121418	0.85[CHB][hapmap]
rs7123632	0.82[ASN][1000 genomes]
rs7124648	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[ASN][1000 genomes]
rs7125807	0.85[CHB][hapmap]
rs7126005	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[ASN][1000 genomes]
rs7127741	0.91[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7128650	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[ASN][1000 genomes]
rs7130006	0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7130812	0.83[JPT][hapmap]
rs7130947	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs747650	0.85[CHB][hapmap]
rs7929688	0.81[ASN][1000 genomes]
rs7931260	0.85[CHB][hapmap]
rs7935346	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7937101	0.80[CHB][hapmap]
rs7937410	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7938169	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7939786	0.81[ASN][1000 genomes]
rs7940240	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7945315	0.85[CHB][hapmap]
rs7946709	0.85[CHB][hapmap]
rs7950753	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7951979	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs901747	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs923324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47124600-47159000	Weak transcription	Primary T cells from cord blood	blood
2	chr11:47129400-47158600	Weak transcription	Spleen	Spleen
3	chr11:47130000-47159000	Weak transcription	Hela-S3	cervix
4	chr11:47131600-47159400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:47131800-47161200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:47140400-47159000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr11:47141000-47159000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:47141000-47159400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:47141000-47164600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:47141200-47158400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:47141200-47159400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:47143600-47164600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:47143600-47175200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:47144200-47159400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:47145200-47164800	Weak transcription	Ovary	ovary
16	chr11:47145200-47174800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:47146000-47159400	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:47147000-47158600	Weak transcription	Fetal Lung	lung
19	chr11:47147000-47159200	Weak transcription	Thymus	Thymus
20	chr11:47147600-47164200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:47148200-47164400	Weak transcription	NHEK	skin
22	chr11:47149000-47170400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:47149400-47173200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr11:47149600-47158600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:47149600-47170400	Weak transcription	Esophagus	oesophagus
26	chr11:47149800-47164200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:47150000-47158600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:47150000-47159200	Weak transcription	Fetal Brain Female	brain
29	chr11:47151000-47159000	Weak transcription	Brain Hippocampus Middle	brain
30	chr11:47151200-47159200	Weak transcription	Fetal Stomach	stomach
31	chr11:47151200-47159200	Weak transcription	HepG2	liver
32	chr11:47151200-47170600	Weak transcription	Gastric	stomach
33	chr11:47152400-47159200	Weak transcription	Brain Anterior Caudate	brain
34	chr11:47152400-47159200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr11:47152400-47159200	Weak transcription	NHDF-Ad	bronchial
36	chr11:47152600-47161400	Weak transcription	Brain Angular Gyrus	brain
37	chr11:47152800-47164600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr11:47153000-47158600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr11:47153000-47159200	Weak transcription	Fetal Muscle Leg	muscle
40	chr11:47153000-47164400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr11:47153000-47164400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr11:47153000-47164400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:47153000-47164400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:47153000-47174400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:47153200-47159200	Weak transcription	Lung	lung
46	chr11:47153400-47174800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr11:47154800-47160800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr11:47155000-47159000	Weak transcription	Fetal Intestine Large	intestine
49	chr11:47155400-47159000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr11:47155400-47164000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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